Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RDV53_RS02715 Genome accession   NZ_CP133470
Coordinates   550406..552271 (-) Length   621 a.a.
NCBI ID   WP_005696977.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 545406..557271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS02695 (RDV53_02695) - 546003..546989 (+) 987 WP_232620856.1 O-antigen ligase -
  RDV53_RS02700 (RDV53_02700) - 546986..548017 (+) 1032 WP_032822587.1 glycosyltransferase family 9 protein -
  RDV53_RS02705 (RDV53_02705) - 547967..548632 (-) 666 WP_005696975.1 YitT family protein -
  RDV53_RS02710 (RDV53_02710) - 548823..550364 (+) 1542 WP_005696976.1 YjjI family glycine radical enzyme -
  RDV53_RS02715 (RDV53_02715) recQ 550406..552271 (-) 1866 WP_005696977.1 DNA helicase RecQ Machinery gene
  RDV53_RS02720 (RDV53_02720) cyaY 552271..552576 (-) 306 WP_005696978.1 iron donor protein CyaY -
  RDV53_RS02725 (RDV53_02725) - 552672..552797 (+) 126 WP_005696979.1 lipoprotein -
  RDV53_RS02730 (RDV53_02730) lysA 552825..554075 (+) 1251 WP_005696981.1 diaminopimelate decarboxylase -
  RDV53_RS02735 (RDV53_02735) hemN 554128..555495 (-) 1368 WP_005696982.1 oxygen-independent coproporphyrinogen III oxidase -
  RDV53_RS02740 (RDV53_02740) - 555495..555938 (-) 444 WP_005696984.1 DUF2489 domain-containing protein -
  RDV53_RS02745 (RDV53_02745) yihI 555944..556501 (-) 558 WP_005696987.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 70347.91 Da        Isoelectric Point: 8.0249

>NTDB_id=799354 RDV53_RS02715 WP_005696977.1 550406..552271(-) (recQ) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MAELAEHAPQKTDLKTTALNTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLI
SLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYISPEKVMTNSFFQLISYAQISFIAIDEAHCISQWG
HDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEKFKPMEQLTRFVLAQK
GKSGIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRECVQQDFQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPR
SIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQT
PCQNCDICLDPPKKYDGLIDAQKVMSTIYRVGQCFGVQYVIAVLRGMHNQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQ
LIHLGFIQQVIGEFNSATLQLTESARPVLKGEVPLELAMPRISSINKIVHTSHKNTVANYDKDLFARLRFLRKQLADKEN
IPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIREHKAILERPKKE

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=799354 RDV53_RS02715 WP_005696977.1 550406..552271(-) (recQ) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGCCGAACTCGCGGAACATGCCCCGCAAAAAACAGACTTAAAAACGACCGCACTTAATACGTTGCGGTCTGTTTTTGG
TTACCAATCTTTTCGCAAAGGGCAGGAAGAAGTGATTCACGCTGCGTTAAGCGGTCAGGATGCCTTAGTGGTGATGGCCA
CAGGAAATGGCAAATCCTTGTGTTATCAAATTCCAGCACTTTGTTTTCCAGGTCTCACATTAGTGATTTCGCCTTTGATT
TCTTTAATGAAAGATCAGGTAGATCAACTCCAAGCAAACGGTATTGAAGCCGATTTTCTAAACTCTAGTCAGACGCCAGA
ACAACAACAACAAGTTGAAAATAAGCTGATTTCAGGACAATTAAAATTATTATATATTTCGCCTGAAAAAGTGATGACAA
ACAGCTTTTTTCAGCTGATTTCTTATGCTCAAATTTCCTTTATCGCCATTGATGAAGCACATTGTATTTCACAATGGGGG
CATGATTTCCGTCCTGAATATACCCAACTTGGCGGCTTAAAAGCGGCTTTTCCAAATGCGCCGATTATGGCATTAACGGC
CACAGCTGATTATGCGACAAGACAGGATATTCTGACTCATCTTAAATTAGACCATCCTCACAAATACATTGGCAGTTTTG
ACCGTCCGAATATTCGTTATACGTTGGAAGAAAAGTTTAAGCCAATGGAGCAGCTTACGCGTTTTGTTTTAGCTCAAAAA
GGTAAAAGTGGCATTGTGTATTGCAATAGTCGTTCGAAGGTGGAACGTATAGCAGAAATTTTGCGAAATAAGGGCGTGTC
GGCTGCTGCGTATCATGCGGGAATGGAAACAGCACTACGCGAATGCGTCCAACAAGATTTCCAGCGAGATAACATTCAAG
TTGTAGTTGCGACGATTGCATTTGGCATGGGCATTAATAAATCCAATGTGCGTTTTGTTGCCCATTTTGATTTGCCGAGA
AGCATTGAATCATATTATCAAGAAACCGGTCGTGCGGGGCGAGATGATTTACCTGCAGAAGCAGTACTTTTCTACGAGCC
GGCTGATTATGCTTGGTTACAGAAAATTTTGCTGGAGAAACCAGAGACGCCACAACGTCAAATTGAGCAACATAAATTGG
AAGCTATCGGTGAATTTGCCGAAAGTCAAACTTGTCGCCGTTTGGTATTACTCAATTATTTTGGCGAACATCGTCAAACA
CCTTGTCAAAACTGCGATATTTGTCTTGACCCGCCCAAGAAATATGACGGTTTAATTGATGCACAAAAAGTGATGTCGAC
GATTTATCGTGTGGGGCAGTGTTTCGGTGTGCAATATGTGATTGCGGTATTGCGAGGGATGCATAATCAAAAAATTGTAG
AACGCCAGCATGATAAGTTAAGTGTTTATGGCATTGGCAAAGATAAAAGCAAAGAACATTGGCAATCCGTGATTCGCCAG
CTTATCCACCTTGGTTTTATTCAACAAGTGATCGGTGAGTTTAATAGTGCAACGCTTCAGCTCACAGAAAGCGCTCGCCC
TGTTTTAAAAGGCGAAGTGCCGCTTGAATTAGCGATGCCACGCATTTCATCCATTAATAAAATTGTGCATACATCCCACA
AAAATACAGTGGCAAATTATGATAAAGATTTGTTTGCTCGTTTGCGTTTCCTACGGAAGCAGCTAGCGGATAAGGAAAAT
ATTCCACCGTATATTGTCTTTAATGATGCGACGTTACAGGAAATGGCACAATATATGCCAACAAGTAATATTGAAATGTT
ACAAATTAATGGCGTAGGGGCAATCAAATTAGAACGCTTTGGGCAGCCGTTTATGGCATTGATTCGAGAGCACAAAGCAA
TTTTAGAAAGGCCAAAAAAAGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(230-334)

HRDC domain (HRDC)

(542-608)

DEAD/DEAH box helicase (DEAD)

(34-190)

RecQ zinc-binding (RecQ_Zn_bind)

(348-409)

RQC domain (RQC)

(411-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.363

96.135

0.378