Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RDV53_RS01415 Genome accession   NZ_CP133470
Coordinates   294541..295152 (-) Length   203 a.a.
NCBI ID   WP_005696683.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 289541..300152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS01385 (RDV53_01385) ybgE 289578..289865 (-) 288 WP_032822627.1 cyd operon protein YbgE -
  RDV53_RS01390 (RDV53_01390) - 289868..289966 (-) 99 WP_100207847.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  RDV53_RS01395 (RDV53_01395) cydB 289978..291117 (-) 1140 WP_005696678.1 cytochrome d ubiquinol oxidase subunit II -
  RDV53_RS01400 (RDV53_01400) - 291132..292697 (-) 1566 WP_005696679.1 cytochrome ubiquinol oxidase subunit I -
  RDV53_RS01405 (RDV53_01405) - 293153..293464 (+) 312 WP_005696680.1 DUF5339 domain-containing protein -
  RDV53_RS01410 (RDV53_01410) ruvB 293520..294527 (-) 1008 WP_005696681.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RDV53_RS01415 (RDV53_01415) ruvA 294541..295152 (-) 612 WP_005696683.1 Holliday junction branch migration protein RuvA Machinery gene
  RDV53_RS01420 (RDV53_01420) ruvC 295211..295783 (-) 573 WP_005696684.1 crossover junction endodeoxyribonuclease RuvC -
  RDV53_RS01425 (RDV53_01425) - 295834..296268 (-) 435 WP_005696685.1 hypothetical protein -
  RDV53_RS01430 (RDV53_01430) - 296286..297026 (-) 741 WP_005696686.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RDV53_RS01435 (RDV53_01435) nudB 297076..297534 (-) 459 WP_005696687.1 dihydroneopterin triphosphate diphosphatase -
  RDV53_RS01440 (RDV53_01440) - 297636..298904 (-) 1269 WP_005696688.1 NRAMP family divalent metal transporter -
  RDV53_RS01445 (RDV53_01445) - 299193..299906 (-) 714 Protein_270 DUF6602 domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22499.23 Da        Isoelectric Point: 6.2728

>NTDB_id=799347 RDV53_RS01415 WP_005696683.1 294541..295152(-) (ruvA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAVAALVALGYKPTDAEKMVKKVAKADLTSEQLIREALKTAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=799347 RDV53_RS01415 WP_005696683.1 294541..295152(-) (ruvA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGATTGGTCGTTTAACAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTCGGTTATGA
ATTATTGTTACCGATGACCAGTTTTTATGATTTACCAGAAATCGGGCAAGAAACTACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTTCGTGAATTAATTAAAACCAATGGT
GTTGGCCCTAAATTGGCACTTGCGATTTTATCGGCAATGTCAGTAGAGCAGTTTGCTTATGCGATTGAACGAGAAGAACT
GTCAAAATTAGTGAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTGGTGGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGTCAAAGTGATTTCTTTGTGGAGAGCAAGCATATTCCTTCAACGTCAGAATTACGCCAAGCTGAAAGCTCAGCA
GATGAAGCGGTTGCTGCATTGGTTGCATTAGGCTATAAACCAACTGATGCTGAAAAAATGGTAAAAAAAGTGGCTAAAGC
AGACTTAACCAGCGAGCAATTAATTCGCGAAGCTTTAAAAACCGCGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389