Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RDV50_RS09940 Genome accession   NZ_CP133462
Coordinates   2063322..2063927 (+) Length   201 a.a.
NCBI ID   WP_070748766.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058322..2068927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09930 (RDV50_09930) - 2060893..2061240 (+) 348 WP_070585426.1 ArsC family reductase -
  RDV50_RS09935 (RDV50_09935) - 2061386..2063239 (+) 1854 WP_137040836.1 SurA N-terminal domain-containing protein -
  RDV50_RS09940 (RDV50_09940) recR 2063322..2063927 (+) 606 WP_070748766.1 recombination mediator RecR Machinery gene
  RDV50_RS09945 (RDV50_09945) - 2064017..2064367 (+) 351 WP_244285023.1 helix-turn-helix domain-containing protein -
  RDV50_RS09950 (RDV50_09950) - 2064271..2065167 (+) 897 WP_137040834.1 IS3 family transposase -
  RDV50_RS09955 (RDV50_09955) - 2065253..2065540 (-) 288 WP_003683377.1 hypothetical protein -
  RDV50_RS09960 (RDV50_09960) - 2065755..2067005 (+) 1251 WP_137040833.1 lipoprotein-releasing ABC transporter permease subunit -
  RDV50_RS09965 (RDV50_09965) lolD 2066998..2067681 (+) 684 WP_003683651.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22361.82 Da        Isoelectric Point: 5.0772

>NTDB_id=799335 RDV50_RS09940 WP_070748766.1 2063322..2063927(+) (recR) [Neisseria subflava strain LMG 5313]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALRQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISVVALDKLVARLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=799335 RDV50_RS09940 WP_070748766.1 2063322..2063927(+) (recR) [Neisseria subflava strain LMG 5313]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCATTAAAAATCCTGCCCAATGTCGGCCCGAAATCCGCACA
ACGCATGGCTTACCAGCTTTTACAGTATAAACGCGAAGAAGCGCAGGAGTTGGTGGATGCTTTGCAATTTGCCTTGAGAC
AGGTGCAGCATTGTCGGATGTGCAACACATTTTGCGAGGGCGATTTGTGTGAAATTTGTGCGGATGAAAAACGCGAGAAA
AGCCGCTTGATGATTGTACATATGCCGGCGGATGTCTCCAGTATGGAGGCGGCTAATTGTCATGATGGTCTGTATTTTGT
TTTGATGGGGCAAGTCAGTCCGGCGCAGGGTATGGATATTTCGGTAGTAGCGTTAGATAAGCTGGTTGCCCGTTTGCAGG
CGAGTGATATTGAGGAAATTATCATTGCCACCAACTTCACAGCCGAAGGCGATGCGACAGCGTATGTATTGGCGGAATTG
TTTAAAAATCTTCCTTATAAAGTCAGCCGATTGGCGAGGGGAATCCCCTTGGGCGGTGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAAGCTGTTTACGATAGAAGAAATATCCAATCTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.071

98.01

0.373
  recR Bacillus subtilis subsp. subtilis str. 168

37.436

97.015

0.363