Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RDV50_RS08690 Genome accession   NZ_CP133462
Coordinates   1815733..1817958 (+) Length   741 a.a.
NCBI ID   WP_137041007.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1810733..1822958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS08675 (RDV50_08675) - 1810852..1811352 (+) 501 WP_137041010.1 SMI1/KNR4 family protein -
  RDV50_RS08680 (RDV50_08680) - 1811546..1814563 (+) 3018 WP_309004587.1 RHS repeat-associated core domain-containing protein -
  RDV50_RS08685 (RDV50_08685) - 1814579..1815250 (+) 672 WP_049344263.1 hypothetical protein -
  RDV50_RS08690 (RDV50_08690) comA 1815733..1817958 (+) 2226 WP_137041007.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RDV50_RS08695 (RDV50_08695) - 1818262..1818882 (+) 621 WP_137041006.1 phosphoribosylanthranilate isomerase -
  RDV50_RS08700 (RDV50_08700) - 1818919..1819521 (+) 603 WP_137041005.1 DNA glycosylase -
  RDV50_RS08705 (RDV50_08705) - 1819526..1819936 (+) 411 WP_137041004.1 hypothetical protein -
  RDV50_RS08710 (RDV50_08710) trpB 1820050..1821252 (+) 1203 WP_137041003.1 tryptophan synthase subunit beta -
  RDV50_RS08715 (RDV50_08715) - 1821447..1822352 (+) 906 WP_137041002.1 DMT family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80917.49 Da        Isoelectric Point: 9.8683

>NTDB_id=799320 RDV50_RS08690 WP_137041007.1 1815733..1817958(+) (comA) [Neisseria subflava strain LMG 5313]
MAWRFMLPAWVVGVVLSFALPFVPPWWAWLSVIIGVLALCRRFAVAWLVLAVCVGMVFGVWQTGLVLAGQWPVGEAAAKV
LTVEVADMSRDDGRRVQFAARAWDERGQEFDLILSDYQRRDWAVGSRWSVPVRVKPVIGEVNVRGLNRETWALANGIDGM
GTLGRDRKLVRQGGGFGLANMRDAVSRSWQRTGDKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVAVLFAWLIKRIFRSLPWIPAKPRVWILAGGVAGALFYALLAGFSVPTQRSVLMLAAFAWAWWRGSGGSGWTAWWQA
LAVVLLLDPLAVLAVGTWLSFGLVAALIWASSGRLKESGWSLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFPFELVQLVAAFLAEYTLRGLVWLATVSPEFAVAAAPVLLLVLAMMAALLLLLPKGMGLKPWACLVL
LGFVFYRPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGTDKLLAGQPEFYPNAEFCQEDKWRWDGVDFELLRPSENTGKEDNDQSCVLRVVANGKALLITGDLGVKGEAGL
IEKYGNALYSQVLILGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTVAVQNRVRAHGITLLRTDLSGALVFALGQ
GDIFQGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=799320 RDV50_RS08690 WP_137041007.1 1815733..1817958(+) (comA) [Neisseria subflava strain LMG 5313]
ATGGCGTGGCGGTTTATGTTGCCTGCTTGGGTGGTGGGTGTAGTGCTTTCGTTTGCGTTGCCGTTTGTACCGCCATGGTG
GGCTTGGTTGTCTGTAATCATTGGCGTGCTTGCGTTGTGTCGAAGATTTGCTGTAGCTTGGTTGGTGCTGGCCGTCTGTG
TAGGCATGGTGTTTGGAGTGTGGCAGACCGGGCTGGTTTTGGCTGGTCAATGGCCTGTGGGGGAGGCGGCGGCTAAAGTT
TTGACGGTTGAAGTGGCGGATATGTCGCGTGATGATGGTCGGCGTGTGCAGTTTGCGGCAAGGGCTTGGGATGAACGTGG
GCAGGAATTTGATTTGATATTGTCGGATTATCAGCGGCGTGATTGGGCGGTGGGCAGTCGGTGGTCTGTACCGGTGCGGG
TAAAGCCGGTGATCGGTGAAGTGAATGTGCGCGGTTTGAACCGTGAAACATGGGCTTTGGCCAATGGTATCGATGGCATG
GGTACTTTGGGGCGCGACAGAAAACTCGTGCGGCAAGGTGGCGGTTTCGGTTTGGCTAATATGCGTGATGCGGTAAGCCG
GAGTTGGCAGAGAACAGGGGATAAGTATCCTGAGTTTTCAGACGGCATAGGGCTGATGCGTGCTTTGAGTATTGGCGAGC
AGTCGGCATTGCGGCCGCCTTTGTGGCAGGCATTCCGTCCTTTGGGGCTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTGACGATGGTGGCAGTATTGTTTGCCTGGCTGATTAAGCGAATTTTCCGTTCTTTACCGTGGATTCCGGCGAAACCGCG
TGTGTGGATATTGGCCGGCGGTGTTGCCGGTGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCTGTGCCGACGCAACGCA
GTGTGTTGATGTTGGCTGCGTTTGCATGGGCATGGTGGCGCGGCAGTGGCGGCTCGGGCTGGACGGCGTGGTGGCAGGCT
TTGGCCGTTGTTTTGTTGTTGGACCCGTTGGCTGTATTGGCCGTGGGAACTTGGCTGTCATTCGGTTTGGTTGCTGCTTT
GATTTGGGCTTCATCAGGCCGTCTGAAAGAGTCGGGCTGGAGTTTGGCTGTACGGGGGCAATGGGCAGCGACGGTATTGT
CAGTGGTATTGCTGGGCTATTTGTTTGCTTCGTTACCTTTGCTCAGTCCGTTGGTTAATGCGCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCGGTTTTCCCGTTTGAGCTTGTTCAGTTGGTAGCGGCATTTTTGGC
GGAATATACTTTACGCGGTTTGGTATGGCTGGCTACGGTATCGCCTGAATTTGCCGTCGCAGCAGCGCCTGTGCTTTTGC
TGGTGTTGGCGATGATGGCGGCTTTGCTGTTATTGTTGCCTAAAGGCATGGGCTTGAAACCTTGGGCATGTTTGGTTTTA
TTGGGTTTTGTGTTTTACCGTCCTGCCAAGTTGGAGGAGGGGGTGGCAAGAGTTACGGTGATGGATGCAGGGCAAGGTTT
GTCGGTATTGATACAAACGCGTAACCGCAATCTTTTGTTTGATACGGGAACGGAACAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCTATGGGTGTGCGCCGTTTGGACAGCTTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAGAGTGTAGCGGCTGTCGGTACCGATAAATTGCTTGCCGGACAACCTGAGTTTTATCCGAATGCAGAGTTTTGCCAAGA
AGACAAATGGCGATGGGACGGCGTAGATTTCGAGTTGCTCAGGCCGTCTGAAAATACGGGCAAGGAAGATAACGACCAAA
GCTGCGTATTGCGTGTCGTGGCAAACGGCAAAGCCTTGTTGATAACCGGAGATTTGGGTGTGAAAGGCGAGGCCGGTTTG
ATTGAGAAATACGGCAATGCGCTGTATAGCCAAGTGTTGATATTGGGACATCACGGCAGCAGCACGGCTTCGTCAGGCAG
CTTTTTGCATACGGTTTCGCCACAATATGCCGTGGCATCCAGCGGCTATGCCAATGCCTACAAACATCCGACCGTTGCCG
TACAAAATCGTGTCCGCGCGCACGGCATTACTTTATTGAGAACGGATTTGTCAGGCGCGTTGGTATTTGCTTTGGGACAG
GGCGATATATTTCAAGGCCGTCTGAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(209-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

69.377

99.595

0.691