Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RDV50_RS04555 Genome accession   NZ_CP133462
Coordinates   936115..937083 (+) Length   322 a.a.
NCBI ID   WP_137041499.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931115..942083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04535 (RDV50_04535) - 931331..931963 (-) 633 WP_137041502.1 glutathione S-transferase family protein -
  RDV50_RS04540 (RDV50_04540) groES 932015..932302 (-) 288 WP_016687158.1 co-chaperone GroES -
  RDV50_RS04545 (RDV50_04545) - 932728..934806 (+) 2079 WP_137041501.1 TonB-dependent siderophore receptor -
  RDV50_RS04550 (RDV50_04550) - 934922..935884 (+) 963 WP_137041500.1 siderophore ABC transporter substrate-binding protein -
  RDV50_RS04555 (RDV50_04555) ceuB 936115..937083 (+) 969 WP_137041499.1 ABC transporter permease Machinery gene
  RDV50_RS04560 (RDV50_04560) - 937073..938044 (+) 972 WP_137041498.1 iron chelate uptake ABC transporter family permease subunit -
  RDV50_RS04565 (RDV50_04565) - 938133..938759 (+) 627 WP_137041497.1 FmdE family protein -
  RDV50_RS04570 (RDV50_04570) - 938840..939598 (+) 759 WP_049328943.1 ABC transporter ATP-binding protein -
  RDV50_RS04575 (RDV50_04575) - 939667..940959 (-) 1293 WP_137041496.1 valine--pyruvate transaminase -
  RDV50_RS04580 (RDV50_04580) - 941101..941259 (-) 159 WP_039862543.1 DUF1328 domain-containing protein -
  RDV50_RS04585 (RDV50_04585) - 941333..941527 (-) 195 WP_137041495.1 CsbD family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34419.81 Da        Isoelectric Point: 9.9951

>NTDB_id=799298 RDV50_RS04555 WP_137041499.1 936115..937083(+) (ceuB) [Neisseria subflava strain LMG 5313]
MFHKPSFLNAVNGVALLILFAVSLSVGVADFKWSALFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMVGASQSAALGLLLMTLLLPAAPLLAKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVIEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADQLTILGLGETVSVNLGLNRTAIMWSGLIIVALITSLVV
VTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLGASLVLLCDIVGRVIVFPFEIPVSTVFGVMGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=799298 RDV50_RS04555 WP_137041499.1 936115..937083(+) (ceuB) [Neisseria subflava strain LMG 5313]
ATGTTTCACAAACCTTCATTTTTAAATGCGGTCAACGGTGTAGCGCTGCTGATATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTGGCCGACTTCAAATGGTCCGCCCTGTTTTCGCTATCCGACAGCCAGCAAGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCCGGCATGATTATGCAGATTTTGATGCGCAACCGTTTTGTC
GAACCGTCGATGGTGGGCGCAAGCCAAAGCGCGGCTTTGGGTTTGCTGCTGATGACCCTGCTGCTACCGGCCGCGCCGCT
GCTGGCAAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACCGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGTGTGATTGAGGCGGTGGCCACCTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAACAGGGCGATTTTTCCGGCGTGTTGCTCGGACGGTATGAGCTGTT
GTGGGCAACGGGGATTTTGGCTTTGTTTGCCTATTTGATTGCCGACCAGCTGACGATTTTGGGTTTGGGCGAAACAGTAA
GCGTAAATTTGGGACTGAACCGGACGGCGATTATGTGGTCGGGGCTGATTATTGTGGCGCTGATTACGTCTTTAGTGGTC
GTGACGGTCGGCAATATTCCGTTTATCGGCCTAGTCGTGCCGAACATCATCAGCCGCCTGATGGGCGACAAACTACGCCA
AAGCCTGCCTGCGGTGGCCTTGCTGGGCGCGTCTTTGGTGTTGCTGTGCGATATTGTCGGACGCGTAATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGCGTGATGGGGACGGCTTTGTTTTTATGGCTTTTATTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(16-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

40

96.273

0.385