Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P0M07_RS20760 Genome accession   NZ_CP119431
Coordinates   4385860..4387299 (-) Length   479 a.a.
NCBI ID   WP_041211850.1    Uniprot ID   A0A2L0TRY9
Organism   Aeromonas caviae strain K523     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4380860..4392299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M07_RS20730 (P0M07_20770) dagF 4381139..4381879 (+) 741 WP_270821474.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  P0M07_RS20735 (P0M07_20775) - 4381983..4383887 (+) 1905 WP_325768728.1 PRD domain-containing protein -
  P0M07_RS20740 (P0M07_20780) npr 4383903..4384175 (-) 273 WP_270821471.1 PTS phosphocarrier protein NPr -
  P0M07_RS20745 (P0M07_20785) rapZ 4384196..4385062 (-) 867 WP_270821470.1 RNase adapter RapZ -
  P0M07_RS20750 (P0M07_20790) ptsN 4385103..4385549 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  P0M07_RS20755 (P0M07_20795) hpf 4385552..4385839 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  P0M07_RS20760 (P0M07_20800) rpoN/rpoN1 4385860..4387299 (-) 1440 WP_041211850.1 RNA polymerase factor sigma-54 Machinery gene
  P0M07_RS20765 (P0M07_20805) lptB 4387365..4388090 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  P0M07_RS20770 (P0M07_20810) lptA 4388103..4388621 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  P0M07_RS20775 (P0M07_20815) lptC 4388608..4389168 (-) 561 WP_104454887.1 LPS export ABC transporter periplasmic protein LptC -
  P0M07_RS20780 (P0M07_20820) kdsC 4389165..4389719 (-) 555 WP_128296853.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  P0M07_RS20785 (P0M07_20825) - 4389719..4390714 (-) 996 WP_325768735.1 KpsF/GutQ family sugar-phosphate isomerase -
  P0M07_RS20790 (P0M07_20830) mlaF 4390921..4391721 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.54 Da        Isoelectric Point: 4.3728

>NTDB_id=799295 P0M07_RS20760 WP_041211850.1 4385860..4387299(-) (rpoN/rpoN1) [Aeromonas caviae strain K523]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQAETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=799295 P0M07_RS20760 WP_041211850.1 4385860..4387299(-) (rpoN/rpoN1) [Aeromonas caviae strain K523]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGGCAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACAGCTCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACTGAGAACCTGCAAGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGAACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGGCCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACTCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATTCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482