Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P1T45_RS07880 Genome accession   NZ_CP119427
Coordinates   1460177..1461979 (-) Length   600 a.a.
NCBI ID   WP_003108203.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455177..1466979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS07850 (P1T45_07855) - 1455743..1455997 (-) 255 WP_233847622.1 hypothetical protein -
  P1T45_RS07855 (P1T45_07860) - 1455982..1456104 (-) 123 WP_003104426.1 hypothetical protein -
  P1T45_RS11440 - 1456356..1456928 (-) 573 Protein_1504 ECF transporter S component -
  P1T45_RS07865 (P1T45_07870) - 1457329..1457979 (-) 651 WP_003108204.1 HAD family hydrolase -
  P1T45_RS07870 (P1T45_07875) - 1457993..1459234 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  P1T45_RS07875 (P1T45_07880) - 1459368..1460006 (-) 639 WP_003107261.1 HAD family phosphatase -
  P1T45_RS07880 (P1T45_07885) pepF 1460177..1461979 (-) 1803 WP_003108203.1 oligoendopeptidase F Regulator
  P1T45_RS07885 (P1T45_07890) - 1462005..1462940 (-) 936 WP_003108202.1 competence protein CoiA -
  P1T45_RS07890 (P1T45_07895) - 1463010..1464153 (-) 1144 Protein_1510 MFS transporter -
  P1T45_RS07895 (P1T45_07900) - 1464253..1464969 (-) 717 WP_003107266.1 pseudouridine synthase -
  P1T45_RS07900 (P1T45_07905) nagB 1465047..1465751 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  P1T45_RS07905 (P1T45_07910) queA 1465943..1466971 (+) 1029 WP_003108200.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69632.56 Da        Isoelectric Point: 4.6524

>NTDB_id=799256 P1T45_RS07880 WP_003108203.1 1460177..1461979(-) (pepF) [Streptococcus parauberis strain KSP45]
MTDNRSHLDEKYTWDLSTIFKTDEEFETELEVLNQDADAAQKYAGHLLDSSKMLFEITNKQLELARRIEKVYVYASMKND
QDTTVAKYQEYQAKASSLYAKFGQVFSFYEPEFMTMSTEQLDTFKAEESQLELYNHYFEKLLKYKEHVLSQREEELLAGA
QEIFNGAEETFSILDNADLIFPIVKDDNGKEVEITHGNFISLMESKDRNVRKAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYQARVHKYDSARQAAMSANFIPEAVYDTLLSSVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETNLDMTYDEAIE
KVQTVLEVFGKEYSDRVNRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLYTLIHETGHSLHSTLTREN
QPYIYGDYSIFLAEIASTTNENILTEALLKEVADDKTRFAILNNYLDGFRGSVFRQTQFAEFEHAIHQADQNGEVLTSEY
INNLYAELNQKYYGLAKEDNHFIQYEWARIPHFYYNYYVYQYSTGFAAASYLANKIVHGSQEDIDAYLSYLKAGNSDYPL
KVIAKAGVDMTQEDYLDQAFAVFEARLTELEELVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=799256 P1T45_RS07880 WP_003108203.1 1460177..1461979(-) (pepF) [Streptococcus parauberis strain KSP45]
ATGACAGATAATCGTAGTCATTTAGATGAAAAGTACACTTGGGATTTAAGTACAATTTTCAAAACAGATGAAGAATTTGA
AACTGAACTAGAGGTCTTAAATCAGGATGCTGATGCAGCGCAAAAATATGCTGGTCATTTATTAGATTCAAGTAAAATGT
TGTTTGAAATTACGAATAAGCAGCTTGAATTGGCGCGTCGCATTGAAAAAGTCTATGTTTATGCATCAATGAAAAACGAT
CAAGATACTACCGTAGCCAAATATCAAGAGTATCAAGCAAAAGCATCTAGTTTATATGCAAAATTTGGGCAAGTTTTCTC
ATTTTATGAGCCTGAATTTATGACCATGTCAACTGAACAATTAGATACTTTTAAAGCTGAAGAAAGTCAATTGGAACTTT
ACAATCACTACTTTGAAAAATTATTAAAATATAAAGAGCATGTTTTGTCTCAACGTGAGGAAGAACTTTTAGCTGGTGCA
CAAGAAATCTTTAATGGGGCAGAAGAAACATTTAGTATTTTGGATAATGCCGATTTGATATTCCCAATTGTGAAAGATGA
TAATGGTAAGGAAGTTGAAATCACACATGGTAACTTTATCAGTTTGATGGAATCAAAAGATCGTAATGTGCGCAAAGCTG
CTTATGAAGCAATGTATAGTACTTATGAACAATTTCAACATACTTACGCCAAAACACTTCAAACAAATGTAAAAGTACAA
AACTATCAAGCGCGTGTTCATAAATATGACTCTGCTCGCCAAGCAGCAATGTCTGCAAATTTCATTCCTGAAGCAGTTTA
TGACACTTTACTTTCATCAGTAAATAAACATTTACCATTATTACATCGTTACTTGAAATTAAGACAAGAAGTTCTTGGTT
TGGATGAACTTAAAATGTATGATGTTTATACACCATTATCTGAGACAAATCTTGATATGACATATGATGAAGCAATTGAG
AAAGTACAAACTGTTTTAGAAGTGTTTGGTAAGGAATATTCAGACCGAGTAAATCGTGCATTCACAGAACGTTGGATTGA
TGTTCATGTTAATAAAGGTAAACGTTCAGGTGCCTATTCAGGTGGATCATATGATACAAATGCATTTATGCTACTTAACT
GGCAAGATAATCTTGATAACCTTTATACACTGATTCATGAAACTGGCCACAGCCTACATTCAACTTTAACTAGAGAAAAT
CAACCATATATTTATGGTGATTATAGTATCTTCTTGGCAGAAATTGCATCGACAACAAATGAAAATATTTTAACTGAAGC
TCTATTGAAAGAAGTAGCTGATGATAAAACTCGTTTTGCCATTTTAAATAATTATTTGGATGGCTTTAGAGGTTCTGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCATGCGATTCACCAAGCTGATCAAAATGGTGAAGTCTTAACAAGTGAATAC
ATTAATAATTTATACGCCGAACTTAATCAAAAATATTATGGACTAGCTAAAGAAGATAATCATTTTATTCAATATGAGTG
GGCTAGAATTCCACATTTCTACTATAATTATTATGTTTATCAATACTCAACTGGTTTTGCTGCGGCAAGCTATTTAGCAA
ATAAAATTGTCCATGGAAGTCAAGAAGATATTGATGCTTATCTGTCATATTTGAAAGCAGGAAATTCTGATTACCCATTA
AAAGTCATTGCCAAAGCAGGTGTTGATATGACTCAAGAAGACTACTTGGATCAAGCATTCGCTGTTTTTGAAGCACGATT
AACTGAATTAGAAGAATTAGTTGCTAAAGGCGCGCACAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.119

99.833

0.71