Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RDU00_RS17550 Genome accession   NZ_CP133449
Coordinates   3322948..3323661 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis strain KK195     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3317948..3328661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS17530 (RDU00_17520) ghrB 3318092..3319069 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  RDU00_RS17535 (RDU00_17525) psdB 3319107..3321047 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  RDU00_RS17540 (RDU00_17530) psdA 3321022..3321801 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  RDU00_RS17545 (RDU00_17535) psdS 3321884..3322954 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  RDU00_RS17550 (RDU00_17540) braR 3322948..3323661 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  RDU00_RS17555 (RDU00_17545) yvzJ 3323808..3324017 (+) 210 WP_003243327.1 lipoprotein -
  RDU00_RS17560 (RDU00_17550) yvcN 3324053..3324817 (-) 765 WP_009968228.1 arylamine N-acetyltransferase family protein -
  RDU00_RS17565 (RDU00_17555) crh 3324818..3325075 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  RDU00_RS17570 (RDU00_17560) whiA 3325099..3326049 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  RDU00_RS17575 (RDU00_17565) mgfK 3326072..3327025 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  RDU00_RS17580 (RDU00_17570) rapZ 3327027..3327914 (-) 888 WP_003243903.1 RNase adapter RapZ -
  RDU00_RS17585 (RDU00_17575) rppI 3327939..3328415 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=799168 RDU00_RS17550 WP_003244535.1 3322948..3323661(-) (braR) [Bacillus subtilis strain KK195]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=799168 RDU00_RS17550 WP_003244535.1 3322948..3323661(-) (braR) [Bacillus subtilis strain KK195]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43