Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDU00_RS15000 Genome accession   NZ_CP133449
Coordinates   2826926..2827636 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis strain KK195     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2821926..2832636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS14980 (RDU00_14975) cysK 2821977..2822912 (+) 936 WP_003229237.1 cysteine synthase A -
  RDU00_RS14985 (RDU00_14980) pepV 2822946..2824337 (-) 1392 WP_004399126.1 dipeptidase PepV -
  RDU00_RS14990 (RDU00_14985) pbuO 2824434..2825732 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  RDU00_RS14995 (RDU00_14990) ythQ 2825772..2826929 (-) 1158 WP_003229232.1 ABC transporter permease -
  RDU00_RS15000 (RDU00_14995) pptA 2826926..2827636 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  RDU00_RS15005 (RDU00_15000) ytzE 2827927..2828148 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  RDU00_RS15010 (RDU00_15005) rsuA 2828269..2828988 (-) 720 WP_003229226.1 pseudouridine synthase -
  RDU00_RS15015 (RDU00_15010) murJ 2829057..2830691 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  RDU00_RS15020 (RDU00_15015) ytfP 2830893..2832155 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=799156 RDU00_RS15000 WP_003229230.1 2826926..2827636(-) (pptA) [Bacillus subtilis strain KK195]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=799156 RDU00_RS15000 WP_003229230.1 2826926..2827636(-) (pptA) [Bacillus subtilis strain KK195]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432