Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RDU00_RS09945 Genome accession   NZ_CP133449
Coordinates   1936758..1938533 (-) Length   591 a.a.
NCBI ID   WP_004399229.1    Uniprot ID   O34748
Organism   Bacillus subtilis strain KK195     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931758..1943533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS09925 (RDU00_09925) desE 1932144..1933202 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  RDU00_RS09930 (RDU00_09930) desK 1933322..1934434 (+) 1113 WP_003231271.1 two-component sensor histidine kinase DesK -
  RDU00_RS09935 (RDU00_09935) desR 1934453..1935052 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  RDU00_RS09940 (RDU00_09940) walN 1935647..1936510 (-) 864 WP_003231267.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  RDU00_RS09945 (RDU00_09945) recQ 1936758..1938533 (-) 1776 WP_004399229.1 DNA helicase RecQ Machinery gene
  RDU00_RS09955 (RDU00_09955) azoJ 1939098..1939724 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  RDU00_RS09960 (RDU00_09960) stpP 1939875..1940366 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  RDU00_RS09965 (RDU00_09965) - 1940441..1940773 (-) 333 WP_003231257.1 hypothetical protein -
  RDU00_RS09970 (RDU00_09970) - 1940851..1941078 (+) 228 WP_004399329.1 hypothetical protein -
  RDU00_RS09975 (RDU00_09975) yocM 1941065..1941541 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  RDU00_RS09980 (RDU00_09980) - 1941608..1941871 (+) 264 WP_004399338.1 hypothetical protein -
  RDU00_RS09985 (RDU00_09985) - 1941876..1942109 (+) 234 WP_003231251.1 hypothetical protein -
  RDU00_RS09990 (RDU00_09990) yozO 1942195..1942539 (-) 345 WP_003220141.1 PH domain-containing protein -
  RDU00_RS09995 (RDU00_09995) yozC 1942896..1943099 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67352.87 Da        Isoelectric Point: 6.2902

>NTDB_id=799117 RDU00_RS09945 WP_004399229.1 1936758..1938533(-) (recQ) [Bacillus subtilis strain KK195]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=799117 RDU00_RS09945 WP_004399229.1 1936758..1938533(-) (recQ) [Bacillus subtilis strain KK195]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCATAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGATTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAGGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

100

100

1