Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDU00_RS05340 Genome accession   NZ_CP133449
Coordinates   1029360..1030103 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain KK195     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024360..1035103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS05305 (RDU00_05310) yhaI 1024688..1025029 (+) 342 WP_009966921.1 YhaI family protein -
  RDU00_RS05310 (RDU00_05315) scoC 1025026..1025637 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  RDU00_RS05315 (RDU00_05320) yhaH 1025815..1026171 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  RDU00_RS05320 (RDU00_05325) - 1026301..1026492 (+) 192 WP_003233238.1 hypothetical protein -
  RDU00_RS05325 (RDU00_05330) trpP 1026566..1027084 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  RDU00_RS05330 (RDU00_05335) serC 1027209..1028288 (-) 1080 WP_003233234.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  RDU00_RS05335 (RDU00_05340) hinT 1028435..1028872 (-) 438 WP_003233231.1 HIT family protein -
  RDU00_RS05340 (RDU00_05345) pptA 1029360..1030103 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  RDU00_RS05345 (RDU00_05350) ecsB 1030096..1031322 (+) 1227 WP_003245169.1 ABC transporter permease EcsB -
  RDU00_RS05350 (RDU00_05355) ecsC 1031342..1032052 (+) 711 WP_003233225.1 EcsC family protein -
  RDU00_RS05355 (RDU00_05360) sndC 1032070..1033260 (-) 1191 WP_003245681.1 N-acetyl amino acid acetylase SndC -
  RDU00_RS05360 (RDU00_05365) - 1033333..1034724 (-) 1392 WP_003233218.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=799072 RDU00_RS05340 WP_003233230.1 1029360..1030103(+) (pptA) [Bacillus subtilis strain KK195]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=799072 RDU00_RS05340 WP_003233230.1 1029360..1030103(+) (pptA) [Bacillus subtilis strain KK195]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547