Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RDU00_RS03625 Genome accession   NZ_CP133449
Coordinates   702882..704012 (+) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis strain KK195     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 697882..709012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS03600 (RDU00_03610) - 698184..698489 (-) 306 WP_003242885.1 hypothetical protein -
  RDU00_RS03605 (RDU00_03615) yezA 698556..698762 (-) 207 WP_003233877.1 bacteriocin immunity protein -
  RDU00_RS03610 (RDU00_03620) atxF 699002..699457 (-) 456 WP_010886434.1 TIGR01741 family protein -
  RDU00_RS03615 (RDU00_03625) yeeF 699477..701486 (-) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  RDU00_RS03620 (RDU00_03630) - 701698..702720 (+) 1023 WP_003243884.1 hypothetical protein -
  RDU00_RS03625 (RDU00_03635) rapC 702882..704012 (+) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  RDU00_RS03630 (RDU00_03640) phrH 704002..704175 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  RDU00_RS03635 (RDU00_03645) yeeI 704335..705054 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RDU00_RS03640 (RDU00_03650) yeeK 705188..705625 (+) 438 WP_003244206.1 spore coat protein YeeK -
  RDU00_RS03645 (RDU00_03655) yezE 705740..706324 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  RDU00_RS03650 (RDU00_03660) yesE 706403..706846 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  RDU00_RS03655 (RDU00_03665) yesF 706843..707703 (+) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  RDU00_RS03660 (RDU00_03670) cotJA 707830..708078 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  RDU00_RS03665 (RDU00_03675) cotJB 708062..708325 (+) 264 WP_003219491.1 spore coat protein CotJB -
  RDU00_RS03670 (RDU00_03680) cotJC 708340..708909 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=799064 RDU00_RS03625 WP_003243267.1 702882..704012(+) (rapC) [Bacillus subtilis strain KK195]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=799064 RDU00_RS03625 WP_003243267.1 702882..704012(+) (rapC) [Bacillus subtilis strain KK195]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402