Detailed information NTG0799048

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RDU00_RS01570
• Genome accession: NZ_CP133449
• Coordinates: 286406..287527 (+)
• Length: 373 a.a.
• NCBI ID: WP_003246478.1
• Uniprot ID: O34327
• Organism: Bacillus subtilis strain KK195
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 281406..292527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDU00_RS01545 (RDU00_01545)	ycdA	281414..282478 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
RDU00_RS01550 (RDU00_01550)	-	282501..282632 (-)	132	WP_003246334.1	hypothetical protein	-
RDU00_RS01555 (RDU00_01555)	ycdB	282806..284224 (+)	1419	WP_003246352.1	YcdB/YcdC domain-containing protein	-
RDU00_RS01560 (RDU00_01560)	ycdC	284411..285772 (+)	1362	WP_010886397.1	YcdB/YcdC domain-containing protein	-
RDU00_RS01565 (RDU00_01565)	cwlK	285780..286283 (-)	504	WP_009966473.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
RDU00_RS01570 (RDU00_01570)	rapF	286406..287527 (+)	1122	WP_003246478.1	response regulator aspartate phosphatase RapJ	Regulator
RDU00_RS01575 (RDU00_01575)	ycdF	287634..288410 (+)	777	WP_003246415.1	SDR family oxidoreductase	-
RDU00_RS01580 (RDU00_01580)	ycdG	288435..290120 (+)	1686	WP_003234736.1	glycoside hydrolase family 13 protein	-
RDU00_RS01585 (RDU00_01585)	znuA	290308..291267 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
RDU00_RS01590 (RDU00_01590)	znuC	291323..292018 (+)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44414.31 Da
• Isoelectric Point: 4.8371

>NTDB_id=799048 RDU00_RS01570 WP_003246478.1 286406..287527(+) (rapF) [Bacillus subtilis strain KK195]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=799048 RDU00_RS01570 WP_003246478.1 286406..287527(+) (rapF) [Bacillus subtilis strain KK195]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATATGATTTAGAAGATATGGAAGAGAATCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGATACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGAACATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCTGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGTT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

3D structure

• PDB: 4GYO

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405