Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P0G38_RS17105 Genome accession   NZ_CP119393
Coordinates   3641174..3642544 (-) Length   456 a.a.
NCBI ID   WP_005226394.1    Uniprot ID   A0A242CQN0
Organism   Enterococcus casseliflavus strain ASE4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3636174..3647544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0G38_RS17085 (P0G38_17085) epsC 3637442..3637978 (-) 537 WP_026008130.1 serine O-acetyltransferase EpsC -
  P0G38_RS17090 (P0G38_17090) gltX 3638239..3639696 (-) 1458 WP_016608945.1 glutamate--tRNA ligase -
  P0G38_RS17095 (P0G38_17095) - 3639866..3641005 (-) 1140 WP_005226396.1 PIN/TRAM domain-containing protein -
  P0G38_RS17100 (P0G38_17100) - 3641041..3641172 (-) 132 WP_254907659.1 hypothetical protein -
  P0G38_RS17105 (P0G38_17105) radA 3641174..3642544 (-) 1371 WP_005226394.1 DNA repair protein RadA Machinery gene
  P0G38_RS17110 (P0G38_17110) - 3642589..3643098 (-) 510 WP_010748479.1 hypothetical protein -
  P0G38_RS17115 (P0G38_17115) proB 3643288..3644103 (+) 816 WP_008376761.1 glutamate 5-kinase -
  P0G38_RS17120 (P0G38_17120) - 3644100..3645344 (+) 1245 WP_074934341.1 glutamate-5-semialdehyde dehydrogenase -
  P0G38_RS17125 (P0G38_17125) - 3645448..3645849 (-) 402 WP_010748477.1 DUF4809 family protein -
  P0G38_RS17130 (P0G38_17130) - 3646000..3646203 (+) 204 WP_010748476.1 hypothetical protein -
  P0G38_RS17135 (P0G38_17135) - 3646259..3647077 (-) 819 WP_016608938.1 ZIP family metal transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49604.28 Da        Isoelectric Point: 8.3034

>NTDB_id=798834 P0G38_RS17105 WP_005226394.1 3641174..3642544(-) (radA) [Enterococcus casseliflavus strain ASE4]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=798834 P0G38_RS17105 WP_005226394.1 3641174..3642544(-) (radA) [Enterococcus casseliflavus strain ASE4]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGTGGGTATAGTTCCCCTAAATATTTAGGGAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTGGAAGAAGTGATCCAAGAAACCGCCGATCGTCGAGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATCGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTCGCTGAGTTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGCTCCTTGATTTTGATCGGTGGGGATCCAGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCTCAGCAATTAGCAGCGATCGGCGGGACGGTTTTGTATGTGTCAGGAGAAGAAAGTGCCGAGCAGATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACAGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGCGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCCAAGACCAATGGCATCGCCATCTTTATCG
TTGGCCATGTGACGAAGGAAGGCTCGATCGCAGGACCACGGATGTTGGAGCATATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGCTTTCGAATTTTGCGGGCCGTAAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTAATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCGATCG
CTGTTAGTATCGCGTCTAGCTACAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAACGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTAGGTTTTACGAAAGTTTATTTGCCTAA
AAATAATCTGACTGGCTGGCAGCCGCCCAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTGCGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242CQN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664