Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3101_RS10540 Genome accession   NZ_CP133215
Coordinates   2252288..2254216 (+) Length   642 a.a.
NCBI ID   WP_230069444.1    Uniprot ID   -
Organism   Streptomyces sp. VNUA74     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247288..2259216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3101_RS10525 (Q3101_10525) - 2248592..2248906 (+) 315 WP_079163499.1 YtxH domain-containing protein -
  Q3101_RS10530 (Q3101_10530) - 2248963..2250417 (+) 1455 WP_226483674.1 FGGY-family carbohydrate kinase -
  Q3101_RS10535 (Q3101_10535) rcrP 2250555..2252288 (+) 1734 WP_064727758.1 ABC transporter ATP-binding protein Regulator
  Q3101_RS10540 (Q3101_10540) rcrQ 2252288..2254216 (+) 1929 WP_230069444.1 ABC transporter ATP-binding protein Regulator
  Q3101_RS10545 (Q3101_10545) - 2254343..2255848 (+) 1506 WP_064727760.1 APC family permease -
  Q3101_RS10550 (Q3101_10550) - 2255850..2256266 (+) 417 WP_226483680.1 universal stress protein -
  Q3101_RS10555 (Q3101_10555) - 2256286..2257545 (-) 1260 WP_372462810.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69698.01 Da        Isoelectric Point: 6.2155

>NTDB_id=798743 Q3101_RS10540 WP_230069444.1 2252288..2254216(+) (rcrQ) [Streptomyces sp. VNUA74]
MAGPAGRMMAGGGPDQRSMDFKGSGKRLVARFRQERTTLFTLVGCIVVSVGLSVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLEGMRDRGDGRTADMLRGTDFTPGQGIDFDAVGRVLLLALAVFAVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVRQWRTTGQLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDELYEAGFRAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQSADPLPGTRPEDLRGRVALE
QVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGADIARMSRDELRAAIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKGMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHTELLAADGAYARLYRAQFAQAVAE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=798743 Q3101_RS10540 WP_230069444.1 2252288..2254216(+) (rcrQ) [Streptomyces sp. VNUA74]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCGGTTCCGGCAGGAGCGGACGACCCTGTTCACCCTGGTGGGCTGCATCGTCGTCAGCGTCGGCCTGAGCG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGAGGGGATGCGGGACCGCGGTGACGGCCGGACGGCGGACATGCTCCGCGGCACCGACTTCAC
CCCGGGCCAGGGCATCGACTTCGACGCGGTGGGCCGGGTGCTGCTGCTGGCGCTGGCCGTGTTCGCGGTGGCCGGGCTGC
TGATGGCGGTCGCCACCCGGCTGGTGAACCGGGCGGTCAACCGCACCATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACCCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTACGGCAGTGGCGCACGACGGGGCAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTCGTCAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGAGCTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTCGCG
GTGGTGGGCGGTCTGCGGGTGGCCTCGGGTTCGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCGTGGCGTCGGCGGAGCGGGTCTTCGAAC
TGCTGGACGCCGAGGAGCAGTCGGCCGACCCGCTCCCGGGCACCCGGCCCGAGGACCTGCGCGGGCGGGTGGCGCTGGAG
CAGGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCGGGGCACACGGTCGC
CATCGTCGGACCGACGGGGGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGGA
TCACGCTGGACGGCGCGGACATCGCGAGGATGTCCCGGGACGAGCTGCGGGCCGCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCCGAGAACATCGCGTACGGGGCGTCGCGGAAGGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGGACCCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCCGGAGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGTCGTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGGGATGGCCAAGCTGGCGCACGGGCGGACCTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGCGCGATCGTGGAGCAGG
GCGCGCACACGGAGCTGCTGGCGGCGGACGGTGCGTACGCCCGGCTGTACCGGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.256

92.523

0.391