Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P1A14_RS08020 Genome accession   NZ_CP119338
Coordinates   1655950..1656396 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N09HSA11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1657309..1658481 1655950..1656396 flank 913


Gene organization within MGE regions


Location: 1655950..1658481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A14_RS08020 (P1A14_08020) comGD 1655950..1656396 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P1A14_RS08025 (P1A14_08025) comGC 1656374..1656685 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P1A14_RS08030 (P1A14_08030) - 1656699..1657205 (-) 507 Protein_1579 type II secretion system F family protein -
  P1A14_RS08035 (P1A14_08035) - 1657309..1658481 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=798597 P1A14_RS08020 WP_001788899.1 1655950..1656396(-) (comGD) [Staphylococcus aureus strain N09HSA11]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=798597 P1A14_RS08020 WP_001788899.1 1655950..1656396(-) (comGD) [Staphylococcus aureus strain N09HSA11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1