Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PY250_RS17710 Genome accession   NZ_CP119335
Coordinates   554154..555251 (-) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus strain 2-1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 549154..560251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS17695 (PY250_17695) - 549733..550791 (-) 1059 WP_005373588.1 HlyD family secretion protein -
  PY250_RS17700 (PY250_17700) slyA 550827..551282 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  PY250_RS17705 (PY250_17705) luxQ 551578..554154 (-) 2577 WP_017635176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PY250_RS17710 (PY250_17710) luxP 554154..555251 (-) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PY250_RS17715 (PY250_17715) - 555583..555900 (-) 318 WP_132937186.1 GIY-YIG nuclease family protein -
  PY250_RS17720 (PY250_17720) - 555897..556547 (-) 651 WP_213904415.1 YceH family protein -
  PY250_RS17725 (PY250_17725) - 556713..556937 (-) 225 WP_171344207.1 hypothetical protein -
  PY250_RS17730 (PY250_17730) - 557158..557472 (+) 315 WP_005373603.1 DUF496 family protein -
  PY250_RS17735 (PY250_17735) - 557594..558937 (+) 1344 WP_206958756.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=798574 PY250_RS17710 WP_005385634.1 554154..555251(-) (luxP) [Vibrio alginolyticus strain 2-1]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=798574 PY250_RS17710 WP_005385634.1 554154..555251(-) (luxP) [Vibrio alginolyticus strain 2-1]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGACGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAGCTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACTGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644