Detailed information NTG0798554

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PY250_RS12585
• Genome accession: NZ_CP119334
• Coordinates: 2699310..2700296 (-)
• Length: 328 a.a.
• NCBI ID: WP_275593398.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2694310..2705296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY250_RS12570 (PY250_12570)	recA	2694855..2695898 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
PY250_RS12575 (PY250_12575)	pncC	2696099..2696581 (-)	483	WP_258671838.1	nicotinamide-nucleotide amidase	-
PY250_RS12580 (PY250_12580)	mutS	2696666..2699227 (+)	2562	WP_213891984.1	DNA mismatch repair protein MutS	-
PY250_RS12585 (PY250_12585)	rpoS	2699310..2700296 (-)	987	WP_275593398.1	RNA polymerase sigma factor RpoS	Regulator
PY250_RS12590 (PY250_12590)	-	2700377..2701300 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
PY250_RS12595 (PY250_12595)	-	2701314..2701940 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PY250_RS12600 (PY250_12600)	surE	2701940..2702716 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
PY250_RS12605 (PY250_12605)	truD	2702716..2703759 (-)	1044	WP_017633547.1	tRNA pseudouridine(13) synthase TruD	-
PY250_RS12610 (PY250_12610)	ispF	2703805..2704281 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PY250_RS12615 (PY250_12615)	ispD	2704296..2705003 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PY250_RS12620 (PY250_12620)	ftsB	2705005..2705286 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37428.35 Da
• Isoelectric Point: 4.7299

>NTDB_id=798554 PY250_RS12585 WP_275593398.1 2699310..2700296(-) (rpoS) [Vibrio alginolyticus strain 2-1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDLERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=798554 PY250_RS12585 WP_275593398.1 2699310..2700296(-) (rpoS) [Vibrio alginolyticus strain 2-1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCTAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851