Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PY250_RS12455 Genome accession   NZ_CP119334
Coordinates   2677144..2677662 (-) Length   172 a.a.
NCBI ID   WP_275593397.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672144..2682662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS12430 (PY250_12430) rimM 2672231..2672779 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  PY250_RS12435 (PY250_12435) rpsP 2672809..2673057 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  PY250_RS12440 (PY250_12440) ffh 2673267..2674649 (-) 1383 WP_005385423.1 signal recognition particle protein -
  PY250_RS12445 (PY250_12445) - 2674874..2675668 (+) 795 WP_005379950.1 cytochrome C assembly family protein -
  PY250_RS12450 (PY250_12450) - 2675793..2677073 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  PY250_RS12455 (PY250_12455) luxS 2677144..2677662 (-) 519 WP_275593397.1 S-ribosylhomocysteine lyase Regulator
  PY250_RS12460 (PY250_12460) - 2677747..2678352 (-) 606 WP_005379943.1 hypothetical protein -
  PY250_RS12465 (PY250_12465) gshA 2678376..2679944 (-) 1569 WP_025768181.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19160.92 Da        Isoelectric Point: 4.7221

>NTDB_id=798551 PY250_RS12455 WP_275593397.1 2677144..2677662(-) (luxS) [Vibrio alginolyticus strain 2-1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNDDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDVGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=798551 PY250_RS12455 WP_275593397.1 2677144..2677662(-) (luxS) [Vibrio alginolyticus strain 2-1]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGATGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGTTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATTGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855