Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PY250_RS07360 Genome accession   NZ_CP119334
Coordinates   1610377..1611903 (-) Length   508 a.a.
NCBI ID   WP_042522937.1    Uniprot ID   A0A7Y4AZ62
Organism   Vibrio alginolyticus strain 2-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605377..1616903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS07340 (PY250_07340) - 1605396..1606826 (-) 1431 WP_042522930.1 lipopolysaccharide biosynthesis protein -
  PY250_RS07345 (PY250_07345) - 1606819..1607991 (-) 1173 WP_042522932.1 glycosyltransferase -
  PY250_RS07350 (PY250_07350) - 1608003..1609187 (-) 1185 WP_042522934.1 glycosyltransferase -
  PY250_RS07355 (PY250_07355) - 1609332..1610402 (-) 1071 WP_042522936.1 glycosyltransferase family 4 protein -
  PY250_RS07360 (PY250_07360) luxO 1610377..1611903 (-) 1527 WP_042522937.1 sigma-54-dependent transcriptional regulator Regulator
  PY250_RS07365 (PY250_07365) - 1612211..1612591 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  PY250_RS07370 (PY250_07370) - 1612603..1613289 (-) 687 WP_005377635.1 AAA family ATPase -
  PY250_RS07375 (PY250_07375) - 1613289..1615391 (-) 2103 WP_017820662.1 SLBB domain-containing protein -
  PY250_RS07380 (PY250_07380) - 1615388..1616254 (-) 867 WP_042522939.1 OmpA family protein -
  PY250_RS07385 (PY250_07385) - 1616281..1616601 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56583.52 Da        Isoelectric Point: 6.0396

>NTDB_id=798542 PY250_RS07360 WP_042522937.1 1610377..1611903(-) (luxO) [Vibrio alginolyticus strain 2-1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRNPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=798542 PY250_RS07360 WP_042522937.1 1610377..1611903(-) (luxO) [Vibrio alginolyticus strain 2-1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCGCACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAATCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
TGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAAATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTCAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTCACTAAAAAGTCTAAAGTTACGAAAACAACGACACCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4AZ62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.696

97.047

0.482