Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PY250_RS01195 Genome accession   NZ_CP119334
Coordinates   259339..260346 (-) Length   335 a.a.
NCBI ID   WP_158157177.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 254339..265346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS01175 (PY250_01175) - 254846..255763 (-) 918 WP_005383178.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PY250_RS01180 (PY250_01180) hslU 256543..257874 (-) 1332 WP_053303349.1 HslU--HslV peptidase ATPase subunit -
  PY250_RS01185 (PY250_01185) hslV 257898..258449 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  PY250_RS01190 (PY250_01190) ftsN 258565..259113 (-) 549 WP_017820300.1 cell division protein FtsN -
  PY250_RS01195 (PY250_01195) cytR 259339..260346 (-) 1008 WP_158157177.1 DNA-binding transcriptional regulator CytR Regulator
  PY250_RS01200 (PY250_01200) priA 260671..262875 (-) 2205 WP_275593425.1 primosomal protein N' -
  PY250_RS01205 (PY250_01205) rpmE 263172..263393 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  PY250_RS01210 (PY250_01210) rpsJ 263850..264161 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  PY250_RS01215 (PY250_01215) rplC 264176..264805 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36879.42 Da        Isoelectric Point: 6.2447

>NTDB_id=798531 PY250_RS01195 WP_158157177.1 259339..260346(-) (cytR) [Vibrio alginolyticus strain 2-1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGITKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=798531 PY250_RS01195 WP_158157177.1 259339..260346(-) (cytR) [Vibrio alginolyticus strain 2-1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCAGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCACTAAAGATCCACAGTATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTGCCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGTCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.82

99.701

0.896