Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MT340_RS11395 Genome accession   NZ_CP119327
Coordinates   2295441..2296805 (-) Length   454 a.a.
NCBI ID   WP_243590059.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290441..2301805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS11380 (MT340_011380) cysE 2291264..2291905 (-) 642 WP_103297554.1 serine O-acetyltransferase -
  MT340_RS11385 (MT340_011385) gltX 2292507..2293961 (-) 1455 WP_243603875.1 glutamate--tRNA ligase -
  MT340_RS11390 (MT340_011390) - 2294347..2295414 (-) 1068 WP_243590058.1 PIN/TRAM domain-containing protein -
  MT340_RS11395 (MT340_011395) radA 2295441..2296805 (-) 1365 WP_243590059.1 DNA repair protein RadA Machinery gene
  MT340_RS11400 (MT340_011400) - 2296942..2299416 (-) 2475 WP_243590060.1 ATP-dependent Clp protease ATP-binding subunit -
  MT340_RS11405 (MT340_011405) - 2299432..2300439 (-) 1008 WP_243590061.1 protein arginine kinase -
  MT340_RS11410 (MT340_011410) - 2300432..2300995 (-) 564 WP_243590062.1 UvrB/UvrC motif-containing protein -
  MT340_RS11415 (MT340_011415) - 2301019..2301480 (-) 462 WP_103297547.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49960.38 Da        Isoelectric Point: 7.0049

>NTDB_id=798500 MT340_RS11395 WP_243590059.1 2295441..2296805(-) (radA) [Staphylococcus sp. NRL 16/872]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKAANPKHGVKAKESSAKVQKLNNIKHEATPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEMIHQTVQ
QEQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWTFPEGIRVVGVSTVHEALKYAFKA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=798500 MT340_RS11395 WP_243590059.1 2295441..2296805(-) (radA) [Staphylococcus sp. NRL 16/872]
TTGGCCAAAAAGAAAGTGATTTTTGAGTGTATGGCTTGTGGCTACCAATCACCTAAATGGATGGGTAAGTGTCCTAATTG
TGGTGCCTGGAATCAAATGGAAGAGATCATTGAAAAAGCTGCAAACCCTAAACATGGCGTTAAAGCGAAAGAATCTAGCG
CTAAAGTACAAAAATTAAATAATATTAAGCACGAAGCAACACCAAGAGTACAAACAGAATCTAAAGAATTTAATCGCGTT
TTAGGTGGAGGCATCGTCAGTGGCTCGTTAGTGTTAATTGGCGGAGATCCAGGTATTGGTAAATCTACGTTATTACTACA
AATTTGTGCATCACTATCACAAAAATTAAATGTTTTATACATTACTGGTGAGGAATCATTGAATCAAACTAAGTTACGTG
CAGATCGACTAGAAGAAGATTCAAGTAATTTAAATGTTTTAGCTGAAACAGATTTAGAAATGATTCACCAAACTGTACAA
CAAGAACAACCAGATATTTTAGTTGTGGATTCTATTCAAACAATATATCACCCTGAAATTAGTTCAGCACCTGGTTCTGT
TTCACAAGTGCGTGAAAGCACACAAAGTTTAATGAATATTGCTAAACAAATGAATATTGCTACATTTATAGTAGGACATG
TGACTAAAGAAGGACAAATTGCTGGTCCACGATTATTAGAACATATGGTAGATACAGTACTGTATTTTGAAGGTGATGAA
CACCACGCTTATCGCATTCTGCGAGCCGTTAAAAACCGTTTTGGTTCTACGAATGAAATGGGTATTTTCGAAATGAAACA
AAGTGGATTAAAAGGCGTACAAAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACTAATGTTCCAGGATCTACTATTG
TGGCAACGATGGAAGGAACGCGGCCATTACTTATTGAAGTGCAAGCTTTAGTGACGCCAACTACATTTAATAACCCAAGA
CGTATGGCGACGGGTATTGATCACAACCGCTTAAGTTTGTTAATGGCAGTATTAGAGAAAAAGGAAAATTATTTATTACA
ACAACAAGATGCTTATATCAAGGTAGCAGGTGGGGTACGTTTAACTGAACCTGCAGTAGACTTAAGTGTGATTGTGGCTA
CTGCCTCAAGCTTTAAAGATAAAGCTGTAGATGGACTCGATTGCTACATTGGTGAAGTTGGTTTAACAGGTGAAGTCAGA
CGTGTGTCACGCATTGAACAACGTGTGCAAGAAGCGGCGAAATTAGGGTTTGAAAGAGTGATTATTCCTCAAACTAATAT
TGGAGGTTGGACATTCCCAGAAGGTATTCGCGTAGTAGGTGTGTCAACTGTACATGAGGCTTTAAAATATGCGTTTAAAG
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

100

0.663
  radA Streptococcus pneumoniae Rx1

60.177

99.559

0.599
  radA Streptococcus pneumoniae D39

60.177

99.559

0.599
  radA Streptococcus pneumoniae R6

60.177

99.559

0.599
  radA Streptococcus pneumoniae TIGR4

60.177

99.559

0.599
  radA Streptococcus mitis NCTC 12261

60.177

99.559

0.599
  radA Streptococcus mitis SK321

60.177

99.559

0.599