Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MT340_RS04395 Genome accession   NZ_CP119327
Coordinates   913833..914549 (-) Length   238 a.a.
NCBI ID   WP_243588935.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 908833..919549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS04375 (MT340_004375) - 909241..909465 (+) 225 WP_103296997.1 sulfurtransferase TusA family protein -
  MT340_RS04380 (MT340_004380) - 909610..910854 (+) 1245 WP_243588932.1 ammonium transporter -
  MT340_RS04385 (MT340_004385) - 911326..912813 (+) 1488 WP_243588933.1 sucrose-6-phosphate hydrolase -
  MT340_RS04390 (MT340_004390) - 912815..913777 (+) 963 WP_243603605.1 carbohydrate kinase -
  MT340_RS04395 (MT340_004395) agrA 913833..914549 (-) 717 WP_243588935.1 quorum-sensing response regulator AgrA Regulator
  MT340_RS04400 (MT340_004400) agrC 914562..915851 (-) 1290 WP_243588936.1 quorum-sensing sensor histidine kinase AgrC -
  MT340_RS04405 (MT340_004405) agrD 915873..916016 (-) 144 WP_243588937.1 cyclic lactone autoinducer peptide AgrD -
  MT340_RS04410 (MT340_004410) - 916018..916584 (-) 567 WP_243588938.1 accessory gene regulator AgrB -
  MT340_RS04415 (MT340_004415) - 917314..918099 (-) 786 WP_243603606.1 carbon-nitrogen family hydrolase -
  MT340_RS04420 (MT340_004420) - 918211..918834 (-) 624 WP_243588939.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27862.75 Da        Isoelectric Point: 5.0630

>NTDB_id=798477 MT340_RS04395 WP_243588935.1 913833..914549(-) (agrA) [Staphylococcus sp. NRL 16/872]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEQSKEMNDVGCYFLDIQLEADMNGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQTRIIDCIETAHTRLKLLSKESNIETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=798477 MT340_RS04395 WP_243588935.1 913833..914549(-) (agrA) [Staphylococcus sp. NRL 16/872]
ATGAAAATATTCATTTGTGAAGATGATGTGAAACAGCGTGAAAATATGGTTTCAATTATTAATAATTACATAATGATTGA
GGAAAAACCAATGGAAATTGCGTTAGCTACAGATGATCCTTATGAAGTTATAGAGCAATCTAAAGAAATGAATGATGTAG
GTTGCTATTTCTTAGATATCCAATTAGAAGCGGATATGAATGGCATTAAATTGGGCAGTGAAATTCGTAAGTACGATCCG
ATTGGTAACATCATTTTTGTGACTAGTCATAGTGAATTAACTTATTTAACGTTTGTCTACAAAGTATCTGCAATGGACTT
TATTTTCAAAGATGATCCAAGCCAGTTGCAAACAAGAATTATTGATTGCATAGAAACTGCACATACACGTTTGAAGTTAC
TTTCCAAAGAAAGTAACATTGAAACAATAGAATTAAAACGTGGTAGCAACTCTATTTATGTCCAATATGATGACGTAATG
TTTTTTGAATCATCAACAAAATCTCATCGTTTAATTGCTCATTTAGACAATCGCCAAATTGAATTTTATGGCAATCTTAA
AGAACTCGCCCAATTAGATGACCGCTTCTTTAGATGTCACAACAGTTTTGTTGTTAATCGTCATAATATCGAATCTATTG
ATTCTAAAGAACGTATAGTTAACTTTAAAAACGGCGAACATTGTTACGCTTCCGTTCGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

88.235

100

0.882