Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MT340_RS00175 Genome accession   NZ_CP119327
Coordinates   42972..44309 (-) Length   445 a.a.
NCBI ID   WP_243603451.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 41786..44108 42972..44309 flank -1136


Gene organization within MGE regions


Location: 41786..44309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS00175 (MT340_000175) ccrA 42972..44309 (-) 1338 WP_243603451.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 52232.92 Da        Isoelectric Point: 9.9323

>NTDB_id=798469 MT340_RS00175 WP_243603451.1 42972..44309(-) (ccrA) [Staphylococcus sp. NRL 16/872]
MVQAIGYVRQSTLKQQSLATQTSLIMETAKQYGWHNIEFYDDKKTGRNTKRSGYQKMVEMIISGECKVLCCYRLNRLHRN
LKNAIQFFEICKKHHVTIISVNDGYFDLSKEFDRFRLNILMSLAEMESNNISEQTRNGIKEKAKQGKMITTHAPFGYQYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKRLAGIYFKNEPLNIVKQTMK

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=798469 MT340_RS00175 WP_243603451.1 42972..44309(-) (ccrA) [Staphylococcus sp. NRL 16/872]
ATGGTCCAAGCCATTGGTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCTACGCAAACGTCACTTATTATGGA
AACTGCAAAGCAATATGGTTGGCACAATATAGAATTTTATGACGATAAGAAAACTGGTCGAAATACAAAACGTTCAGGCT
ATCAAAAAATGGTAGAAATGATTATATCTGGAGAATGCAAAGTATTGTGTTGCTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCCATACAATTCTTTGAAATTTGTAAAAAGCATCACGTCACAATCATCAGTGTGAATGATGGTTATTTTGA
CTTATCTAAAGAATTTGACCGCTTTCGCCTAAACATACTTATGAGTCTAGCTGAAATGGAGTCTAATAATATCAGTGAAC
AAACACGAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCAATATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTATTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ATCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTATCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGACT
CGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATGA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

84.045

100

0.84
  ccrA Staphylococcus aureus N315

65.618

100

0.656