Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PY372_RS18665 Genome accession   NZ_CP119302
Coordinates   544890..545987 (-) Length   365 a.a.
NCBI ID   WP_021484469.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 539890..550987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS18650 (PY372_18825) - 540554..541609 (-) 1056 WP_062852541.1 HlyD family secretion protein -
  PY372_RS18655 (PY372_18830) - 541647..542102 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  PY372_RS18660 (PY372_18835) luxQ 542314..544890 (-) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PY372_RS18665 (PY372_18840) luxP 544890..545987 (-) 1098 WP_021484469.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PY372_RS18670 (PY372_18845) - 546339..546659 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  PY372_RS18675 (PY372_18850) - 546656..547306 (-) 651 WP_062852542.1 YceH family protein -
  PY372_RS18680 (PY372_18855) - 547483..547697 (-) 215 Protein_485 hypothetical protein -
  PY372_RS18685 (PY372_18860) - 548025..548339 (+) 315 WP_005453573.1 DUF496 family protein -
  PY372_RS18690 (PY372_18865) - 548462..549799 (+) 1338 WP_025524743.1 MATE family efflux transporter -
  PY372_RS18695 (PY372_18870) - 549873..550850 (-) 978 WP_015313433.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41369.70 Da        Isoelectric Point: 5.0568

>NTDB_id=798417 PY372_RS18665 WP_021484469.1 544890..545987(-) (luxP) [Vibrio parahaemolyticus strain LC]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPITPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=798417 PY372_RS18665 WP_021484469.1 544890..545987(-) (luxP) [Vibrio parahaemolyticus strain LC]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCTGTGAGAG
ACGATCCTGTACCTATTACCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCGCTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.835

99.726

0.647