Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PY372_RS12955 Genome accession   NZ_CP119301
Coordinates   2779858..2780376 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain LC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2774858..2785376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS12930 (PY372_13105) rimM 2774967..2775515 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  PY372_RS12935 (PY372_13110) rpsP 2775544..2775792 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  PY372_RS12940 (PY372_13115) ffh 2776002..2777384 (-) 1383 WP_062851773.1 signal recognition particle protein -
  PY372_RS12945 (PY372_13120) - 2777597..2778391 (+) 795 WP_323709911.1 inner membrane protein YpjD -
  PY372_RS12950 (PY372_13125) - 2778517..2779797 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  PY372_RS12955 (PY372_13130) luxS 2779858..2780376 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  PY372_RS12960 (PY372_13135) - 2780443..2781048 (-) 606 WP_005484861.1 hypothetical protein -
  PY372_RS12965 (PY372_13140) gshA 2781073..2782641 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=798399 PY372_RS12955 WP_005462534.1 2779858..2780376(-) (luxS) [Vibrio parahaemolyticus strain LC]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=798399 PY372_RS12955 WP_005462534.1 2779858..2780376(-) (luxS) [Vibrio parahaemolyticus strain LC]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGTTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCCCCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCAGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884