Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PZ484_RS24290 Genome accession   NZ_CP119298
Coordinates   5219925..5220482 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5214925..5225482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS24270 pilR 5216201..5217538 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PZ484_RS24275 thiO 5217584..5218678 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  PZ484_RS24280 - 5218813..5219322 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  PZ484_RS24285 - 5219428..5219934 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  PZ484_RS24290 pilV 5219925..5220482 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PZ484_RS24295 pilW 5220479..5221303 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PZ484_RS24300 pilX 5221300..5221887 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  PZ484_RS24305 pilY1 5221899..5225390 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=798317 PZ484_RS24290 WP_003119423.1 5219925..5220482(+) (pilV) [Pseudomonas aeruginosa strain SNDPR-01]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=798317 PZ484_RS24290 WP_003119423.1 5219925..5220482(+) (pilV) [Pseudomonas aeruginosa strain SNDPR-01]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTATACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995