Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PZ484_RS10235 Genome accession   NZ_CP119298
Coordinates   2194153..2194788 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2189153..2199788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS10220 - 2189859..2191103 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  PZ484_RS10225 - 2191191..2191724 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PZ484_RS10230 comA 2191855..2194080 (+) 2226 WP_126555341.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PZ484_RS10235 exbB 2194153..2194788 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PZ484_RS10240 - 2194785..2195225 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  PZ484_RS10245 lpxK 2195225..2196223 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PZ484_RS10250 - 2196261..2196446 (+) 186 WP_003091157.1 Trm112 family protein -
  PZ484_RS10255 kdsB 2196446..2197210 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PZ484_RS10260 - 2197210..2197674 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  PZ484_RS10265 murB 2197671..2198690 (+) 1020 WP_014602712.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=798302 PZ484_RS10235 WP_003091163.1 2194153..2194788(+) (exbB) [Pseudomonas aeruginosa strain SNDPR-01]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=798302 PZ484_RS10235 WP_003091163.1 2194153..2194788(+) (exbB) [Pseudomonas aeruginosa strain SNDPR-01]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81