Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PZ484_RS09565 Genome accession   NZ_CP119298
Coordinates   2038828..2041596 (+) Length   922 a.a.
NCBI ID   WP_034072896.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033828..2046596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS09545 - 2034463..2035224 (+) 762 WP_003115017.1 class I SAM-dependent methyltransferase -
  PZ484_RS09550 leuB 2035283..2036365 (+) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  PZ484_RS09555 asd 2036435..2037547 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  PZ484_RS09560 - 2037649..2038659 (+) 1011 WP_023095367.1 aspartate-semialdehyde dehydrogenase -
  PZ484_RS09565 fimV 2038828..2041596 (+) 2769 WP_034072896.1 motility hub landmark protein FimV Machinery gene
  PZ484_RS09570 truA 2041618..2042475 (+) 858 WP_003160688.1 tRNA pseudouridine(38-40) synthase TruA -
  PZ484_RS09575 - 2042565..2043200 (+) 636 WP_003104200.1 phosphoribosylanthranilate isomerase -
  PZ484_RS09580 accD 2043469..2044341 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  PZ484_RS09585 folC 2044338..2045627 (+) 1290 WP_003104198.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  PZ484_RS09590 - 2045631..2046296 (+) 666 WP_016253172.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 922 a.a.        Molecular weight: 97214.51 Da        Isoelectric Point: 3.9481

>NTDB_id=798300 PZ484_RS09565 WP_034072896.1 2038828..2041596(+) (fimV) [Pseudomonas aeruginosa strain SNDPR-01]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKALADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAASQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAAVAGLAGTK
LAQDELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPV
DDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPVLSLPDDFD
LSLADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKL
DLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2769 bp        

>NTDB_id=798300 PZ484_RS09565 WP_034072896.1 2038828..2041596(+) (fimV) [Pseudomonas aeruginosa strain SNDPR-01]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGTGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAATGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGCTCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCTCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTTCAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCACCAAG
CTGGCGCAGGACGAGCTGGATAGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGC
GGCAGGACAGGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGT
CCGACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGACAAGCCTGTC
GACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTT
CTCCCTGGATCTCGACGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCG
CGGCGCCTGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGTGTTGTCCCTGCCGGACGACTTCGAT
CTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGT
GAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAG
CGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTG
GATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAA
CGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.807

100

0.988