Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PZY29_RS16740 Genome accession   NZ_CP119296
Coordinates   3602623..3603993 (-) Length   456 a.a.
NCBI ID   WP_005226394.1    Uniprot ID   A0A242CQN0
Organism   Enterococcus casseliflavus strain ASE2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597623..3608993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZY29_RS16725 (PZY29_16725) epsC 3598896..3599432 (-) 537 WP_034872105.1 serine O-acetyltransferase EpsC -
  PZY29_RS16730 (PZY29_16730) gltX 3599693..3601150 (-) 1458 WP_005226398.1 glutamate--tRNA ligase -
  PZY29_RS16735 (PZY29_16735) - 3601320..3602459 (-) 1140 WP_005232908.1 PIN/TRAM domain-containing protein -
  PZY29_RS16740 (PZY29_16740) radA 3602623..3603993 (-) 1371 WP_005226394.1 DNA repair protein RadA Machinery gene
  PZY29_RS16745 (PZY29_16745) - 3604038..3604547 (-) 510 WP_005232909.1 dUTP diphosphatase -
  PZY29_RS16750 (PZY29_16750) proB 3604736..3605551 (+) 816 WP_034872095.1 glutamate 5-kinase -
  PZY29_RS16755 (PZY29_16755) - 3605548..3606792 (+) 1245 WP_016611670.1 glutamate-5-semialdehyde dehydrogenase -
  PZY29_RS16760 (PZY29_16760) - 3606899..3607300 (-) 402 WP_016611671.1 DUF4809 family protein -
  PZY29_RS16765 (PZY29_16765) - 3607452..3607655 (+) 204 WP_008376766.1 hypothetical protein -
  PZY29_RS16770 (PZY29_16770) - 3607713..3608531 (-) 819 WP_005232914.1 ZIP family metal transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49604.28 Da        Isoelectric Point: 8.3034

>NTDB_id=798267 PZY29_RS16740 WP_005226394.1 3602623..3603993(-) (radA) [Enterococcus casseliflavus strain ASE2]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=798267 PZY29_RS16740 WP_005226394.1 3602623..3603993(-) (radA) [Enterococcus casseliflavus strain ASE2]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGCGGGTATAGTTCCCCTAAATATTTAGGAAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTAGAAGAAGTGATCCAAGAAACCGCTGATCGTCGTGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATTGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTCGCTGAGTTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGTTCCTTAATTTTGATCGGTGGGGATCCCGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGAACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAGCAGATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACGGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGTGTGGC
AGGCAGTGTCAGCCAAGTGAGAGAAACGACCGCAGAATTGCTGAAAATCGCTAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCACATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACCGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGGGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGTTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCAATCG
CTGTTAGTATCGCCTCCAGCTATAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAATGCGATCGAACAACGGGTCAAAGAGGTGCAGAAACTGGGCTTTACAAAAGTTTATTTGCCTAA
AAACAATCTGACTGGTTGGCAGCCGCCAAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTACGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242CQN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664