Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PZY29_RS06805 Genome accession   NZ_CP119296
Coordinates   1467582..1469255 (+) Length   557 a.a.
NCBI ID   WP_275626649.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain ASE2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462582..1474255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZY29_RS06775 (PZY29_06775) - 1462902..1463753 (+) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PZY29_RS06780 (PZY29_06780) xseA 1463754..1465106 (+) 1353 WP_087663983.1 exodeoxyribonuclease VII large subunit -
  PZY29_RS06785 (PZY29_06785) - 1465087..1465308 (+) 222 WP_005235356.1 exodeoxyribonuclease VII small subunit -
  PZY29_RS06790 (PZY29_06790) - 1465305..1466201 (+) 897 WP_005235358.1 polyprenyl synthetase family protein -
  PZY29_RS06795 (PZY29_06795) - 1466198..1467019 (+) 822 WP_016620449.1 TlyA family RNA methyltransferase -
  PZY29_RS06800 (PZY29_06800) argR 1467117..1467566 (+) 450 WP_005235362.1 arginine repressor -
  PZY29_RS06805 (PZY29_06805) recN 1467582..1469255 (+) 1674 WP_275626649.1 DNA repair protein RecN Machinery gene
  PZY29_RS06810 (PZY29_06810) - 1469352..1470083 (+) 732 WP_008378480.1 alpha/beta hydrolase -
  PZY29_RS06815 (PZY29_06815) - 1470483..1471337 (+) 855 WP_008378479.1 phosphate ABC transporter substrate-binding protein PstS -
  PZY29_RS06820 (PZY29_06820) pstC 1471435..1472355 (+) 921 WP_005235375.1 phosphate ABC transporter permease subunit PstC -
  PZY29_RS06825 (PZY29_06825) pstA 1472355..1473239 (+) 885 WP_008378478.1 phosphate ABC transporter permease PstA -
  PZY29_RS06830 (PZY29_06830) pstB 1473253..1474059 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62674.82 Da        Isoelectric Point: 4.5379

>NTDB_id=798249 PZY29_RS06805 WP_275626649.1 1467582..1469255(+) (recN) [Enterococcus casseliflavus strain ASE2]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKDLT
ADLGIDEEEVLIVQRDISQSGKNICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLTLMDGFGDDSFKAELAD
YRQAYQSYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEELLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEITKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAP
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSKEERVAEIARMLSGSEITDLTVEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=798249 PZY29_RS06805 WP_275626649.1 1467582..1469255(+) (recN) [Enterococcus casseliflavus strain ASE2]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATTTCCAACTTGCACTTATCTTTCCATGAGGGAATGACGGCACT
GACAGGTGAGACAGGTGCCGGGAAATCAATTATTATCGATGCGATGGGTTTGCTAGCAGGCGGTAGAGGTTCCAGCGACT
ACTTGCGTCAAGGAGCAGAGAAATGCCGTTTAGAAGGGATCTTCGAATGGCCGAATCAGCAGGAGTTCAAAGACTTGACC
GCAGATTTAGGTATTGATGAAGAAGAAGTTTTGATCGTACAACGAGATATCTCTCAATCGGGGAAAAATATTTGTCGTGT
CAATGGTCGAACCGTTACCTTGTCGGTTTTGCGTCAAATCGGTTTATTCTTGGTCGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGACCTTGATGGATGGGTTTGGGGATGATAGCTTTAAAGCGGAGCTTGCGGAT
TACCGTCAAGCCTATCAAAGCTATCGCTCTTTAGAAAAACACGTCAGGACCATTCAAGAAAATGAACAGCTATATGTCCA
GCGAATGGACATGTTGCGTTTTCAACAAGAAGAAATCGCCCAAGCAGAATTGATGGAAAATGAAGAAGAACTGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGTGCCTTATCTGCCGAAGAA
GTCAATAGCCTAGATGGGGTCAGTGTAGCTTTATCCGAGATCCAGTCAATCGCCCATCTTGATCCGGCTTACGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAATCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCGATT
CCTGTGATTCTTGCTTATTATGATGAGATCACTAAAGAAATCAGCGAGTCTGCCTATACAGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTCTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAACTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCACAATTTGAAGTACGGTTTGCACCT
GGCTCAAAACAATTGAGTAGCAGCGGATTTGACACCGTAGAATTTTATTTGACCACAAATCCTGGTGAAGGCATGAAGCC
GTTGGTGCGGGTTGCTTCTGGGGGAGAACTTTCACGGATCTTACTGGCCCTCAAATCAATTTTCTCTCGGAAACAAGGAA
TCACCAGTATTGTTTTTGACGAAGTTGATACTGGGGTCAGTGGCCGAGTAGCCCAAGCAATTGCTGAAAAAATCGCCAAG
ATCGCAGCCAATTCGCAAGTTTTGTGTATCACTCACTTGCCGCAAGTAGCTGCTGTAGCGGATAATCAATATTTTATTGA
AAAAGCAATTCAAGAAGGACGGACAGAAACCCACGTCCGTAAACTATCTAAAGAAGAACGGGTGGCAGAGATCGCCCGTA
TGCTCTCAGGTTCAGAAATCACCGATTTAACGGTCGAACATGCACGAGAACTATTGGCCCTTGCACACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.544

100

0.487