Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PY247_RS15445 Genome accession   NZ_CP119223
Coordinates   3197707..3198111 (+) Length   134 a.a.
NCBI ID   WP_228716610.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3192707..3203111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS15410 (PY247_15410) - 3193348..3193653 (+) 306 WP_101236491.1 hypothetical protein -
  PY247_RS15415 (PY247_15415) - 3193810..3194319 (+) 510 WP_070074937.1 hypothetical protein -
  PY247_RS15420 (PY247_15420) - 3194372..3194875 (-) 504 WP_275572997.1 hypothetical protein -
  PY247_RS15425 (PY247_15425) - 3195213..3195557 (+) 345 WP_004806631.1 PilZ domain-containing protein -
  PY247_RS15430 (PY247_15430) - 3195582..3196355 (+) 774 WP_101236494.1 TatD family hydrolase -
  PY247_RS15435 (PY247_15435) - 3196397..3197005 (+) 609 WP_004653870.1 TetR/AcrR family transcriptional regulator -
  PY247_RS15440 (PY247_15440) - 3197017..3197564 (+) 548 Protein_3007 type II secretion system protein -
  PY247_RS15445 (PY247_15445) xcpV 3197707..3198111 (+) 405 WP_228716610.1 type II secretion system minor pseudopilin GspI Machinery gene
  PY247_RS15450 (PY247_15450) gspJ 3198108..3198844 (+) 737 Protein_3009 type II secretion system minor pseudopilin GspJ -
  PY247_RS15455 (PY247_15455) gspK 3198801..3199835 (+) 1035 WP_004653865.1 type II secretion system minor pseudopilin GspK -
  PY247_RS15460 (PY247_15460) - 3199944..3200540 (+) 597 WP_004653863.1 6-carboxytetrahydropterin synthase -
  PY247_RS15465 (PY247_15465) ung 3200585..3201297 (+) 713 Protein_3012 uracil-DNA glycosylase -
  PY247_RS15470 (PY247_15470) - 3201294..3202418 (+) 1125 WP_171066041.1 enoyl-CoA hydratase/isomerase family protein -
  PY247_RS15475 (PY247_15475) tadA 3202424..3202933 (+) 510 WP_070074932.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15017.37 Da        Isoelectric Point: 9.9729

>NTDB_id=798227 PY247_RS15445 WP_228716610.1 3197707..3198111(+) (xcpV) [Acinetobacter proteolyticus strain AP54]
MKRCFTHPRSGFTLLEVMVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLDGTQSKQITSQ
GETWQIDKKAQSTISPKIQRIELQVSLFNNEQGKVEAGVTNLVFFNYPAKARTQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=798227 PY247_RS15445 WP_228716610.1 3197707..3198111(+) (xcpV) [Acinetobacter proteolyticus strain AP54]
GTGAAACGTTGTTTCACTCATCCTCGCTCAGGATTTACCTTACTCGAAGTGATGGTGGCCTTGGCGATCTTTGCCGTTGC
AGCCATTGCCCTAACTAAAGTTGCGATGCAGTACACGCAGTCAACTTCAAATGCGATTTTAAGAACTAAAGCACAATTTG
TCGCAATGAATGAAGTGGCGATGATGGAGATCAATCAGGAATGGCTGGATGGAACACAATCCAAGCAAATCACTTCCCAA
GGTGAAACCTGGCAAATTGATAAAAAAGCACAATCGACCATTAGCCCAAAAATCCAACGAATCGAGTTGCAAGTCAGCTT
ATTTAATAATGAACAAGGTAAGGTCGAAGCGGGTGTTACCAATCTTGTGTTCTTTAATTATCCTGCAAAGGCGAGAACAC
AATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

83.607

91.045

0.761