Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PY247_RS14990 Genome accession   NZ_CP119223
Coordinates   3113198..3114154 (+) Length   318 a.a.
NCBI ID   WP_275572960.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3108198..3119154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS14975 (PY247_14975) - 3109399..3110123 (+) 725 Protein_2917 hypothetical protein -
  PY247_RS14980 (PY247_14980) - 3110193..3111652 (-) 1460 Protein_2918 DASS family sodium-coupled anion symporter -
  PY247_RS14985 (PY247_14985) - 3111922..3112905 (+) 984 WP_275572959.1 ion transporter -
  PY247_RS14990 (PY247_14990) ceuB 3113198..3114154 (+) 957 WP_275572960.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  PY247_RS14995 (PY247_14995) - 3114144..3115100 (+) 957 WP_070074982.1 iron chelate uptake ABC transporter family permease subunit -
  PY247_RS15000 (PY247_15000) - 3115091..3115855 (+) 765 WP_275572961.1 ATP-binding cassette domain-containing protein -
  PY247_RS15005 (PY247_15005) - 3115865..3116818 (+) 954 WP_275572962.1 ABC transporter substrate-binding protein -
  PY247_RS15010 (PY247_15010) - 3116913..3117521 (+) 609 WP_275572963.1 DUF2238 domain-containing protein -
  PY247_RS15015 (PY247_15015) - 3117543..3118764 (-) 1222 Protein_2925 MFS transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34699.82 Da        Isoelectric Point: 9.8121

>NTDB_id=798226 PY247_RS14990 WP_275572960.1 3113198..3114154(+) (ceuB) [Acinetobacter proteolyticus strain AP54]
MIKRRYLILLLLPLAFISLFVGVGEMSLAGLWAGNPQDWQLFWTSRLPRLMAIIVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFVKTGFAIAVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPVLILIYIFANRFVLAGLGQDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRRTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGVVGSVIFLWLLLRRYRYAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=798226 PY247_RS14990 WP_275572960.1 3113198..3114154(+) (ceuB) [Acinetobacter proteolyticus strain AP54]
ATGATTAAGCGGCGTTACCTGATTTTATTATTGCTTCCATTGGCATTTATTTCCTTATTTGTCGGTGTGGGTGAGATGAG
TCTCGCGGGTCTGTGGGCGGGTAACCCTCAAGACTGGCAGCTGTTCTGGACCAGTCGTTTACCACGTCTCATGGCAATTA
TTGTGGCAGGTGCGGGCCTAAGTGTCTGTGGCTTGATTATGCAATCACTCAGCCGCAACCGTTTTGTTTCTCCAACCACT
GCTGGTTTGTATGACTGTGCCCGTTTAGGCGTCTTGGTTTCGATTATCTTACTGCCGAGTGCTTCAATCTTCGTAAAAAC
AGGCTTTGCAATTGCCGTGACACTGATAGGGGCAATGGCATTTATGAGCATTCTGGCGACCCTCAAGCATCGGGATACCG
TGTTTGTTCCACTGGTGGGAATGATTTTCGGCAGTATTATCTCGGCCTTTACCACCTTTATCGCCTTGCAAATGGATTTA
TTGCAGAACTTGGCGGGGTGGTTGCAAGGTGATTTTTCCACCATTTTAAATGGCCAATATGAGCTGATCTATCTCAGTGT
TCCTGTGTTGATTCTGATTTATATCTTTGCCAATCGTTTTGTCTTGGCAGGCTTGGGACAGGATTTTGCTACCAATCTGG
GACTGAATTATAAGCAGACTTTATTTCTAGGCTTGTTGCTTGTCTCGGTGATTACAGGCGTGGTGATTGTGACCGTGGGT
GCGATTCCTTTTCTAGGACTGATCGTACCGAATTTGGTCAGCTTATATCTAGGCGACAATATCCGTCGAACACTTTCACA
TACTGCATTACTCGGTGCCTTACTGGTTCTGCTTTGCGATGTTTTTGGCAGGGTGGTGATTTATCCCTATGAGGTCTCAG
TGAGTTTGATTATGGGTGTCGTCGGCAGTGTGATTTTCCTGTGGTTGTTGCTCAGGAGATATCGCTATGCCTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.521

98.428

0.487