Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PY247_RS02615 Genome accession   NZ_CP119223
Coordinates   583111..583998 (-) Length   295 a.a.
NCBI ID   WP_004655953.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578111..588998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS02595 (PY247_02595) - 578666..579742 (+) 1077 WP_004655946.1 PhoH family protein -
  PY247_RS02600 (PY247_02600) ybeY 579808..580292 (+) 485 Protein_508 rRNA maturation RNase YbeY -
  PY247_RS02605 (PY247_02605) - 580304..580603 (+) 300 WP_070076374.1 antibiotic biosynthesis monooxygenase -
  PY247_RS02610 (PY247_02610) - 580673..582823 (-) 2151 WP_275573606.1 TonB-dependent siderophore receptor -
  PY247_RS02615 (PY247_02615) tonB2 583111..583998 (-) 888 WP_004655953.1 TonB family protein Machinery gene
  PY247_RS02620 (PY247_02620) - 584243..584923 (+) 681 WP_004655955.1 hypothetical protein -
  PY247_RS02625 (PY247_02625) - 585120..585825 (+) 706 Protein_513 DUF3108 domain-containing protein -
  PY247_RS02630 (PY247_02630) - 585914..586489 (+) 576 WP_004655958.1 xanthine phosphoribosyltransferase -
  PY247_RS02635 (PY247_02635) - 586539..587363 (-) 825 WP_004655960.1 YwqG family protein -
  PY247_RS02640 (PY247_02640) thyA 587535..588377 (+) 843 WP_275573607.1 thymidylate synthase -
  PY247_RS02645 (PY247_02645) - 588402..588911 (+) 510 WP_159725397.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33424.10 Da        Isoelectric Point: 9.1138

>NTDB_id=798205 PY247_RS02615 WP_004655953.1 583111..583998(-) (tonB2) [Acinetobacter proteolyticus strain AP54]
MLNKINFRSELSPYWWQDPIFVGAVALAMLLHGAVLAIQFTMPSPSDTSTKEIAVTVRPSTEKVKDADFLAQADQKGSGD
FREAHRMSSDLPAPMQADATTGEKELESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKTLDDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDQAKQQRLAGEVRLMVILNAEGGIRAIRL
IESSGHAILDEAAKASVRRGAPFGAFDANMKKEISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=798205 PY247_RS02615 WP_004655953.1 583111..583998(-) (tonB2) [Acinetobacter proteolyticus strain AP54]
ATGTTGAATAAAATAAATTTTCGTTCAGAACTGTCTCCTTATTGGTGGCAAGATCCAATTTTTGTCGGGGCTGTGGCTCT
GGCGATGCTGCTGCATGGCGCTGTACTGGCGATTCAATTTACCATGCCATCACCCTCTGACACCTCCACCAAAGAAATTG
CGGTCACCGTTCGTCCAAGTACAGAAAAAGTTAAAGACGCAGACTTTTTGGCGCAAGCGGATCAAAAAGGTTCAGGTGAC
TTCCGCGAAGCACATCGGATGTCGAGTGATTTGCCCGCACCGATGCAAGCCGATGCGACCACAGGTGAAAAAGAGTTAGA
AAGTCTGGAAAAAATTCAGCAAAAGCGTGAACTCAAATTTGAAGAAAAAGTGCTCATGACGGTTTTGAGTTGGCAAAAAC
AGGCAGAACAAAGCGAACGTAAAAAGACCTTGGATGATCTACAAAGTCAGTTTCAAGCCAAAGCTGCCATGGTGGCGAGC
TTAGAAGCGCAATATTTACAACGCCAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTTGATGGGATTCAGGCTAA
ACAAGACGCGTCTGCTGCTTACTTAGATAAATTTCGCCAAAAAGTCGAGTTATACGGGAATCGCTATTATCCCGATCAAG
CCAAACAACAACGCTTGGCGGGAGAAGTTCGTCTAATGGTGATTTTGAATGCTGAAGGAGGAATCCGAGCGATTCGTCTC
ATTGAAAGTTCTGGGCATGCAATCTTGGATGAGGCAGCCAAAGCATCGGTTCGCCGTGGTGCACCTTTTGGCGCATTTGA
TGCCAACATGAAAAAAGAAATCTCTGAGTTACGCATCATTCGGACATGGCGTTTTGATCCGGTCGATGCTGAATTTGAAG
TGCACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769