Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   PY247_RS01720 Genome accession   NZ_CP119223
Coordinates   398751..399266 (+) Length   171 a.a.
NCBI ID   WP_070075756.1    Uniprot ID   A0A1E7R4P8
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393751..404266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS01700 (PY247_01700) - 394289..395494 (+) 1206 WP_275573549.1 RtcB family protein -
  PY247_RS01705 (PY247_01705) - 395499..395657 (+) 159 WP_275573550.1 hypothetical protein -
  PY247_RS01710 (PY247_01710) omp38 395776..396876 (-) 1101 WP_275573551.1 outer membrane protein Omp38 -
  PY247_RS01715 (PY247_01715) omp38 397325..398383 (-) 1059 WP_004652384.1 outer membrane protein Omp38 -
  PY247_RS01720 (PY247_01720) fimT 398751..399266 (+) 516 WP_070075756.1 GspH/FimT family pseudopilin Machinery gene
  PY247_RS01725 (PY247_01725) - 399377..400552 (+) 1176 WP_004802873.1 thiolase family protein -
  PY247_RS01730 (PY247_01730) - 400682..401125 (+) 444 WP_004652388.1 VOC family protein -
  PY247_RS01735 (PY247_01735) - 401190..401675 (-) 486 WP_101235587.1 DUF934 domain-containing protein -
  PY247_RS01740 (PY247_01740) - 401668..403312 (-) 1645 Protein_344 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19392.44 Da        Isoelectric Point: 9.1626

>NTDB_id=798203 PY247_RS01720 WP_070075756.1 398751..399266(+) (fimT) [Acinetobacter proteolyticus strain AP54]
MFKSFGFTLIELIITIGILAILSSVAAPYFREIMASNEMKNLKRILTIHIQKAKTDAQLYHKNVMLCPSSDSENCSTDWN
KGFIGFIDLNRNSQRDPNEMLLFIVPLNHKYGHLSFRSFGRSPNSLVFQAENGLPFASNGSFVYCSESPQYHTKIVLSRM
GNIRFEKLASC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=798203 PY247_RS01720 WP_070075756.1 398751..399266(+) (fimT) [Acinetobacter proteolyticus strain AP54]
ATGTTTAAATCTTTTGGCTTTACCTTGATTGAGTTAATTATCACTATTGGAATTTTGGCAATTTTGAGCAGCGTTGCCGC
TCCTTATTTCCGTGAAATAATGGCTTCTAATGAAATGAAGAATCTCAAAAGAATCCTCACAATTCATATACAAAAAGCAA
AAACGGATGCACAGCTTTATCATAAAAATGTGATGCTGTGCCCAAGTTCAGATTCCGAGAACTGTTCCACAGATTGGAAT
AAAGGTTTTATCGGATTTATTGATCTTAATCGGAATAGCCAACGTGATCCGAATGAAATGCTACTTTTTATTGTTCCTCT
CAATCATAAATACGGTCATCTCAGTTTTAGGTCTTTTGGTCGAAGTCCCAACAGTCTTGTTTTTCAAGCTGAGAATGGCC
TTCCCTTTGCCTCCAATGGCAGCTTTGTCTACTGTTCTGAATCCCCGCAGTATCATACTAAAATTGTCTTGAGTCGTATG
GGCAATATTCGTTTTGAAAAGTTAGCCAGTTGCTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(50-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7R4P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

49.701

97.661

0.485