Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RBI06_RS09530 Genome accession   NZ_CP133093
Coordinates   2064621..2064950 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2059621..2069950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI06_RS09515 (RBI06_09515) - 2060350..2061294 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  RBI06_RS09520 (RBI06_09520) - 2061395..2062420 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  RBI06_RS09525 (RBI06_09525) - 2062433..2064430 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  RBI06_RS09530 (RBI06_09530) comEA/comE1 2064621..2064950 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  RBI06_RS09540 (RBI06_09540) - 2065167..2066363 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  RBI06_RS09545 (RBI06_09545) uvrB 2066551..2068563 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=798092 RBI06_RS09530 WP_003091430.1 2064621..2064950(+) (comEA/comE1) [Pseudomonas aeruginosa strain 002]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=798092 RBI06_RS09530 WP_003091430.1 2064621..2064950(+) (comEA/comE1) [Pseudomonas aeruginosa strain 002]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385