Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RBI06_RS02400 Genome accession   NZ_CP133093
Coordinates   533792..534157 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528792..539157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI06_RS02370 (RBI06_02370) pyrR 529414..529926 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RBI06_RS02375 (RBI06_02375) ruvX 530038..530472 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RBI06_RS02380 (RBI06_02380) - 530472..531041 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  RBI06_RS02385 (RBI06_02385) - 531090..531983 (-) 894 WP_003084580.1 TonB family protein -
  RBI06_RS02390 (RBI06_02390) gshB 532130..533083 (-) 954 WP_033989800.1 glutathione synthase -
  RBI06_RS02395 (RBI06_02395) pilG 533338..533745 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RBI06_RS02400 (RBI06_02400) pilH 533792..534157 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RBI06_RS02405 (RBI06_02405) - 534208..534744 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RBI06_RS02410 (RBI06_02410) pilJ 534829..536877 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RBI06_RS02415 (RBI06_02415) pilK 536938..537813 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=798077 RBI06_RS02400 WP_003084587.1 533792..534157(+) (pilH) [Pseudomonas aeruginosa strain 002]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=798077 RBI06_RS02400 WP_003084587.1 533792..534157(+) (pilH) [Pseudomonas aeruginosa strain 002]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCAGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364