Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PY824_RS10685 Genome accession   NZ_CP119172
Coordinates   2047749..2049110 (-) Length   453 a.a.
NCBI ID   WP_099412345.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2042749..2054110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS10660 (PY824_10660) - 2043854..2044141 (-) 288 WP_223246335.1 LURP-one-related/scramblase family protein -
  PY824_RS10665 (PY824_10665) - 2044317..2044997 (-) 681 WP_014295394.1 IS6 family transposase -
  PY824_RS10670 (PY824_10670) - 2045381..2046331 (-) 951 WP_014295395.1 magnesium transporter CorA family protein -
  PY824_RS10675 (PY824_10675) - 2046462..2046842 (-) 381 WP_014295396.1 hypothetical protein -
  PY824_RS10680 (PY824_10680) - 2047129..2047623 (-) 495 WP_014295398.1 carbonic anhydrase -
  PY824_RS10685 (PY824_10685) radA 2047749..2049110 (-) 1362 WP_099412345.1 DNA repair protein RadA Machinery gene
  PY824_RS10690 (PY824_10690) - 2049128..2049660 (-) 533 Protein_2049 histidine phosphatase family protein -
  PY824_RS10695 (PY824_10695) - 2049691..2050137 (-) 447 WP_014295400.1 dUTP diphosphatase -
  PY824_RS10700 (PY824_10700) - 2051412..2052179 (-) 768 WP_014295401.1 epoxyqueuosine reductase QueH -
  PY824_RS10705 (PY824_10705) - 2052374..2053390 (+) 1017 WP_014295402.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49507.81 Da        Isoelectric Point: 6.0243

>NTDB_id=798071 PY824_RS10685 WP_099412345.1 2047749..2049110(-) (radA) [Streptococcus macedonicus strain SGM CIP105683]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGNIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVPQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=798071 PY824_RS10685 WP_099412345.1 2047749..2049110(-) (radA) [Streptococcus macedonicus strain SGM CIP105683]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGTCGTTGTCCGAATTG
TTCGTCCTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCAACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGACATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACTCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCAACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACAATTATGAGCCCCGATATTTCTGGGGTTCAAGGGTCGGT
ACCACAAGTACGTGAAGTGACCGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATTGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGATGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTACAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCCAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCACT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAACAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.079

100

0.881
  radA Streptococcus pneumoniae D39

88.079

100

0.881
  radA Streptococcus pneumoniae R6

88.079

100

0.881
  radA Streptococcus pneumoniae TIGR4

88.079

100

0.881
  radA Streptococcus mitis SK321

88.079

100

0.881
  radA Streptococcus mitis NCTC 12261

87.859

100

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

100

0.618