Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PY824_RS08390 Genome accession   NZ_CP119172
Coordinates   1608661..1609470 (-) Length   269 a.a.
NCBI ID   WP_115265894.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1607007..1608263 1608661..1609470 flank 398


Gene organization within MGE regions


Location: 1607007..1609470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS08385 (PY824_08385) - 1607007..1608263 (+) 1257 WP_115265893.1 ISL3 family transposase -
  PY824_RS08390 (PY824_08390) vicX 1608661..1609470 (-) 810 WP_115265894.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30279.19 Da        Isoelectric Point: 5.3716

>NTDB_id=798061 PY824_RS08390 WP_115265894.1 1608661..1609470(-) (vicX) [Streptococcus macedonicus strain SGM CIP105683]
MSEIAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDEQNMIGKLDLAQKHIFERGKTLTHGDIDIESFGVSHDAVEPQFYRLMKDNKSFVVLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRSGSYPWSLKQRVLSDKGHLSNEDGAGTMIRTIGNHTKKIYLGHLSKENNIKELARMTMEN
NLIQADFGVGYDMKVFDTSPDEATPLTEL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=798061 PY824_RS08390 WP_115265894.1 1608661..1609470(-) (vicX) [Streptococcus macedonicus strain SGM CIP105683]
ATGTCTGAAATTGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAAGACT
TAGATGCTATTTTTATTACACACGAACATTCTGATCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCAAAATATGATCGGAAAGCTCGATTTAGCTCAAAAACATAT
TTTTGAACGTGGGAAAACATTGACACATGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCATTTGTTGTCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTATTTGATTGAATCGAATCATGACGTTGAGATTTTACGTTCAGGCTCTTATCCGTGGAG
TTTGAAACAACGTGTCCTATCTGATAAAGGACACTTGTCAAACGAAGATGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCACACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCGCATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGATACCTCACCAGACGAAGCAACACCATTAAC
AGAGTTATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758