Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PY824_RS03425 Genome accession   NZ_CP119172
Coordinates   613650..615452 (+) Length   600 a.a.
NCBI ID   WP_058621775.1    Uniprot ID   A0A380K4L2
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 608650..620452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS03400 (PY824_03400) queA 609309..610337 (-) 1029 WP_039670588.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PY824_RS03405 (PY824_03405) - 610554..611012 (+) 459 WP_223246245.1 VIT1/CCC1 transporter family protein -
  PY824_RS03410 (PY824_03410) nagB 611140..611844 (+) 705 WP_093528074.1 glucosamine-6-phosphate deaminase -
  PY824_RS03415 (PY824_03415) - 611920..612636 (+) 717 WP_093528077.1 pseudouridine synthase -
  PY824_RS03420 (PY824_03420) - 612689..613660 (+) 972 WP_014294215.1 competence protein CoiA -
  PY824_RS03425 (PY824_03425) pepF 613650..615452 (+) 1803 WP_058621775.1 oligoendopeptidase F Regulator
  PY824_RS03430 (PY824_03430) - 615526..616044 (+) 519 Protein_605 GNAT family N-acetyltransferase -
  PY824_RS03435 (PY824_03435) - 616066..616677 (+) 612 WP_039670591.1 HAD-IA family hydrolase -
  PY824_RS03440 (PY824_03440) - 616731..617432 (+) 702 WP_039670592.1 O-methyltransferase -
  PY824_RS03445 (PY824_03445) - 617502..618524 (+) 1023 WP_039670593.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68896.90 Da        Isoelectric Point: 4.6015

>NTDB_id=798045 PY824_RS03425 WP_058621775.1 613650..615452(+) (pepF) [Streptococcus macedonicus strain SGM CIP105683]
MSDNRSHIDEKDQWDLSTVFATDDAWEAELASLDGDLENAKAYKGRLTASSNDLLAITESYLSLSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFELLDNADIIFPIVLDDKGKEIQLTHGNFITLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=798045 PY824_RS03425 WP_058621775.1 613650..615452(+) (pepF) [Streptococcus macedonicus strain SGM CIP105683]
ATGTCAGATAATCGTAGTCATATTGATGAAAAAGACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGCCTTGATGGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCGTTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTTCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAGTTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTATTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGAGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TAAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTACCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCTCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCCTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGTTATGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTAGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATACTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACTATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATTATCCATAAGGCAGACCAAGCTGGAGAAGTATTGACGAGTGATTAT
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGATTGTTCACGGTACACAAGCTGATATTGACCGCTACCTTGATTATTTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATTAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGGGCACATCTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380K4L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.5

100

0.705