Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   PY824_RS03130 Genome accession   NZ_CP119172
Coordinates   558196..560481 (-) Length   761 a.a.
NCBI ID   WP_039670569.1    Uniprot ID   A0A081JIP5
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 553196..565481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS03115 (PY824_03115) ileS 554197..556995 (+) 2799 WP_115266020.1 isoleucine--tRNA ligase -
  PY824_RS03120 (PY824_03120) - 557095..557397 (-) 303 WP_014294163.1 DUF1827 family protein -
  PY824_RS03125 (PY824_03125) - 557468..557914 (-) 447 WP_099412195.1 NUDIX hydrolase -
  PY824_RS03130 (PY824_03130) clpE 558196..560481 (-) 2286 WP_039670569.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  PY824_RS03135 (PY824_03135) - 560623..560784 (-) 162 WP_223246240.1 hypothetical protein -
  PY824_RS03140 (PY824_03140) - 560808..561113 (-) 306 WP_342032626.1 DUF3278 domain-containing protein -
  PY824_RS03145 (PY824_03145) - 561178..561330 (-) 153 WP_081498600.1 helix-turn-helix transcriptional regulator -
  PY824_RS03150 (PY824_03150) argF 561716..562696 (+) 981 WP_058621839.1 ornithine carbamoyltransferase -
  PY824_RS03155 (PY824_03155) - 562832..563062 (+) 231 WP_003063726.1 DUF1797 family protein -
  PY824_RS03160 (PY824_03160) - 563316..564002 (+) 687 WP_014294168.1 amino acid ABC transporter permease -
  PY824_RS03165 (PY824_03165) - 564002..564736 (+) 735 WP_014294169.1 amino acid ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84981.82 Da        Isoelectric Point: 4.7429

>NTDB_id=798042 PY824_RS03130 WP_039670569.1 558196..560481(-) (clpE) [Streptococcus macedonicus strain SGM CIP105683]
MLCQNCHLNESTIHLYTNVNGQQKQIDLCQNCYQIMKTDPNNTILSGLRDATASFTQNQSTGMNPFDDFFSNLNNFHAFG
GQDFQNTPPTQSGGGNNGGNNNNYRPNGAASQQQQKGLLEEFGINITDIARRGDIDPVIGRDAEIIRVIEILNRRTKNNP
VLIGEPGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEIHEI
VGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDPALERRMQPVKVNEPSVEETITILRGIQKKYEDYHHV
KYSDDAIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPQEIDKRLAEAENLKTQATREEDYERAAYFRDQI
AKYKEMQQQTINEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLINLADDLKTHVIGQDDAVDKIAKAIRRNRVGLG
TPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYS
LILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKTEASVGFGAAREGRTNSVLGELSNYFSP
EFMNRFDGIIEFKALSKDNLFQIVNLMLDDVNKRLATNDIHLEVTDKVKEKLVELGYDPKMGARPLRRTIQDHIEDAITD
FYLENPSEKDLKAAMTSNDKIIIKSDKKVEKEETTVSAESE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=798042 PY824_RS03130 WP_039670569.1 558196..560481(-) (clpE) [Streptococcus macedonicus strain SGM CIP105683]
ATGCTCTGTCAAAATTGTCATTTAAACGAATCAACAATTCATCTTTATACAAATGTCAATGGTCAGCAAAAGCAAATTGA
TTTGTGCCAAAACTGCTATCAAATCATGAAAACTGACCCTAACAATACTATTTTAAGTGGTTTAAGAGATGCAACAGCTT
CTTTCACACAAAATCAATCTACTGGTATGAATCCTTTTGATGATTTCTTCAGTAATTTGAATAATTTCCACGCATTCGGT
GGACAAGATTTCCAAAATACGCCTCCAACACAATCAGGTGGTGGAAATAACGGCGGCAATAATAACAATTATCGTCCAAA
CGGCGCAGCTAGCCAACAACAACAAAAAGGTTTGCTAGAAGAATTTGGTATCAACATTACTGATATTGCTCGTCGCGGTG
ACATCGACCCTGTCATTGGGCGTGATGCCGAAATCATTCGTGTGATTGAAATTCTTAACCGTCGTACAAAAAATAATCCT
GTTCTTATTGGTGAACCTGGGGTTGGTAAAACAGCCGTTGTTGAAGGATTAGCTCAAAAAATCGTAGATGGTGACGTTCC
ACAAAAACTTCAAAATAAAGAAGTTATTCGTCTTGATGTCGTTAGCCTTGTACAAGGAACAGGTATTCGTGGTCAATTTG
AAGAACGTATGCAAAAACTCATGGAAGAAATCCGTGAACGTAAGGACGTTATTCTCTTCATTGACGAAATTCACGAAATT
GTCGGTGCTGGTTCTGCAGGCGACGGTAACATGGACGCTGGTAATATTTTAAAACCAGCACTTGCTCGTGGTGAACTTCA
ATTAGTTGGTGCTACGACACTCAATGAATACCGCATTATTGAAAAAGATCCAGCACTTGAACGCCGTATGCAACCTGTCA
AAGTTAATGAACCAAGCGTGGAAGAAACGATTACGATTCTTCGTGGTATTCAAAAGAAATACGAAGATTATCATCATGTC
AAATACAGCGATGATGCAATTGAGGCTGCCGCAAATCTTTCTAACCGTTACATTCAAGACCGCTTCCTCCCAGATAAAGC
CATTGATTTGCTAGACGAAGCTGGTTCTAAGATGAATTTAACCCTTAACTTTGTTGACCCACAAGAAATCGACAAGCGTT
TAGCGGAAGCTGAAAACCTAAAAACACAAGCTACTCGCGAGGAAGATTATGAACGCGCAGCTTATTTCCGTGACCAAATC
GCTAAATACAAGGAAATGCAACAACAAACAATCAACGAAGACGATATTCCAGTTATTACTGAAAAGACTATCGAAGCTAT
CGTTGAAGAAAAAACTAACATTCCTGTTGGTGATTTGAAAGAAAAGGAACAATCACAATTAATCAATCTCGCTGATGATT
TGAAAACACACGTCATTGGTCAAGATGATGCCGTTGACAAAATTGCCAAAGCCATTCGTCGTAACCGTGTCGGTCTCGGT
ACACCAAATCGTCCAATCGGTTCATTCCTCTTTGTTGGACCAACTGGTGTTGGTAAAACAGAACTTTCTAAACAATTAGC
GATTGAACTTTTCGGCTCAGCTGACAGCATGATTCGTTTCGATATGTCTGAATACATGGAAAAACATGCAGTCGCTAAAC
TTGTTGGAGCACCTCCAGGATACGTTGGTTACGAAGAAGCTGGTCAATTGACAGAAAAAGTTCGCCGTAATCCATACTCA
CTCATCCTTCTTGACGAAGTTGAAAAAGCGCATCCTGATGTTATGCATATGTTCTTGCAAGTTCTTGATGACGGTCGTTT
GACTGACGGTCAAGGTCGTACAGTAAGCTTCAAAGATACTATTATTATCATGACTTCTAATGCTGGTACTGGTAAAACAG
AAGCTTCAGTTGGTTTCGGTGCTGCTCGTGAAGGACGTACAAATTCTGTCCTTGGTGAACTTAGCAACTACTTCAGCCCT
GAATTCATGAACCGTTTCGACGGTATTATCGAATTTAAGGCTCTTAGCAAGGACAATCTTTTCCAAATTGTTAACCTTAT
GCTTGACGATGTCAATAAACGTCTAGCAACTAACGATATTCACCTCGAAGTCACTGATAAGGTAAAAGAAAAATTAGTTG
AACTTGGCTACGATCCTAAAATGGGAGCTCGTCCATTACGTCGTACTATCCAAGACCACATTGAAGATGCCATTACAGAC
TTCTATCTTGAAAATCCAAGCGAAAAAGATTTGAAAGCTGCTATGACAAGCAATGATAAAATTATCATCAAATCTGATAA
AAAGGTTGAAAAAGAAGAAACAACCGTTTCAGCAGAATCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A081JIP5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.239

98.817

0.842

  clpE Streptococcus pneumoniae Rx1

83.267

98.949

0.824

  clpE Streptococcus pneumoniae D39

83.267

98.949

0.824

  clpE Streptococcus pneumoniae R6

83.267

98.949

0.824

  clpE Streptococcus pneumoniae TIGR4

83.267

98.949

0.824

  clpC Lactococcus lactis subsp. cremoris KW2

76.424

99.212

0.758

  clpC Bacillus subtilis subsp. subtilis str. 168

51.657

87.254

0.451

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.48

82.129

0.398

  clpC Streptococcus pneumoniae Rx1

46.552

83.837

0.39

  clpC Streptococcus pneumoniae D39

46.552

83.837

0.39

  clpC Streptococcus pneumoniae TIGR4

46.395

83.837

0.389

  clpC Streptococcus mutans UA159

47.819

81.34

0.389

  clpC Streptococcus thermophilus LMD-9

46.527

81.34

0.378

  clpC Streptococcus thermophilus LMG 18311

46.067

81.866

0.377