Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   P0S03_RS15365 Genome accession   NZ_CP119165
Coordinates   3102177..3102791 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 2075     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3097177..3107791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0S03_RS15350 (P0S03_15350) helD 3097404..3099455 (-) 2052 WP_172750083.1 DNA helicase IV -
  P0S03_RS15355 (P0S03_15355) - 3099581..3100027 (+) 447 WP_003035892.1 YccF domain-containing protein -
  P0S03_RS15360 (P0S03_15360) yccS 3100046..3102199 (+) 2154 WP_032939270.1 YccS family putative transporter -
  P0S03_RS15365 (P0S03_15365) sxy/tfoX 3102177..3102791 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  P0S03_RS15370 (P0S03_15370) sulA 3103008..3103517 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  P0S03_RS15375 (P0S03_15375) ompA 3103875..3104921 (+) 1047 WP_003035883.1 porin OmpA -
  P0S03_RS15380 (P0S03_15380) matP 3105011..3105463 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  P0S03_RS15385 (P0S03_15385) - 3105649..3107409 (+) 1761 WP_172750084.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=797964 P0S03_RS15365 WP_003035889.1 3102177..3102791(-) (sxy/tfoX) [Citrobacter freundii strain 2075]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=797964 P0S03_RS15365 WP_003035889.1 3102177..3102791(-) (sxy/tfoX) [Citrobacter freundii strain 2075]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686