Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RBH03_RS09235 Genome accession   NZ_CP132995
Coordinates   1987460..1987789 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain ZYPA192     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982460..1992789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH03_RS09220 (RBH03_09225) uvrB 1983847..1985859 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  RBH03_RS09225 (RBH03_09230) - 1986047..1987243 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  RBH03_RS09235 (RBH03_09240) comEA/comE1 1987460..1987789 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  RBH03_RS09240 (RBH03_09245) - 1987980..1989977 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  RBH03_RS09245 (RBH03_09250) - 1989990..1991015 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  RBH03_RS09250 (RBH03_09255) - 1991116..1992060 (-) 945 WP_031628069.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=797814 RBH03_RS09235 WP_003104586.1 1987460..1987789(-) (comEA/comE1) [Pseudomonas aeruginosa strain ZYPA192]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=797814 RBH03_RS09235 WP_003104586.1 1987460..1987789(-) (comEA/comE1) [Pseudomonas aeruginosa strain ZYPA192]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385