Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PXV46_RS10665 Genome accession   NZ_CP119113
Coordinates   2137290..2138006 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain GENOMIC22-002     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132290..2143006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV46_RS10635 (PXV46_10635) - 2132557..2133183 (+) 627 WP_000522384.1 nitroreductase family protein -
  PXV46_RS10640 (PXV46_10640) - 2133491..2134276 (+) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  PXV46_RS10645 (PXV46_10645) - 2134878..2135012 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  PXV46_RS10650 (PXV46_10650) agrB 2135248..2135817 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  PXV46_RS10655 (PXV46_10655) - 2135814..2135954 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  PXV46_RS10660 (PXV46_10660) - 2135979..2137271 (+) 1293 WP_001825886.1 GHKL domain-containing protein -
  PXV46_RS10665 (PXV46_10665) agrA 2137290..2138006 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  PXV46_RS10670 (PXV46_10670) - 2138380..2139324 (-) 945 WP_031903406.1 carbohydrate kinase -
  PXV46_RS10675 (PXV46_10675) - 2139321..2140805 (-) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  PXV46_RS10680 (PXV46_10680) - 2140954..2141904 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=797754 PXV46_RS10665 WP_000688492.1 2137290..2138006(+) (agrA) [Staphylococcus aureus strain GENOMIC22-002]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=797754 PXV46_RS10665 WP_000688492.1 2137290..2138006(+) (agrA) [Staphylococcus aureus strain GENOMIC22-002]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1