Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RBH02_RS11340 Genome accession   NZ_CP132993
Coordinates   2399124..2399621 (-) Length   165 a.a.
NCBI ID   WP_070870417.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SRMPA3860     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2394124..2404621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH02_RS11325 (RBH02_11325) - 2395713..2398337 (-) 2625 WP_170954639.1 hypothetical protein -
  RBH02_RS11330 (RBH02_11330) - 2398494..2398805 (-) 312 WP_070870415.1 DUF4113 domain-containing protein -
  RBH02_RS11335 (RBH02_11335) - 2398940..2399113 (-) 174 WP_162950487.1 hypothetical protein -
  RBH02_RS11340 (RBH02_11340) radC 2399124..2399621 (-) 498 WP_070870417.1 DNA repair protein RadC Machinery gene
  RBH02_RS11345 (RBH02_11345) - 2399593..2400543 (-) 951 WP_070870419.1 hydrolase or metal-binding protein -
  RBH02_RS11350 (RBH02_11350) - 2400630..2401634 (-) 1005 WP_070870421.1 YqaJ viral recombinase family protein -
  RBH02_RS11355 (RBH02_11355) - 2401713..2402681 (-) 969 WP_070870423.1 DUF932 domain-containing protein -
  RBH02_RS11360 (RBH02_11360) - 2402922..2404084 (+) 1163 WP_086937300.1 IS3-like element IS222 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18376.08 Da        Isoelectric Point: 6.4946

>NTDB_id=797724 RBH02_RS11340 WP_070870417.1 2399124..2399621(-) (radC) [Pseudomonas aeruginosa strain SRMPA3860]
MRLHKLKASETTGTYLVESPVTENDILLMAKQLASLRLRKGRALTSPKEVFSHLQTLLADYEHEVFALLMLDSRHRVIAF
EEVFRGTLDGASVYPREIVKIALEHNAAAIILVHNHPSGDPEPSQADRNLTTKLQDALNLVGVRTLDHVVVGQEDCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=797724 RBH02_RS11340 WP_070870417.1 2399124..2399621(-) (radC) [Pseudomonas aeruginosa strain SRMPA3860]
ATGCGCCTGCACAAGCTGAAAGCCAGTGAAACGACCGGCACCTACCTGGTCGAGTCCCCGGTGACGGAAAACGACATCCT
GCTGATGGCCAAGCAACTGGCCAGCCTTCGTCTGCGCAAGGGACGTGCCCTGACGTCTCCCAAGGAGGTGTTCAGTCACC
TGCAGACGCTGCTGGCTGATTATGAGCACGAGGTTTTTGCACTGCTCATGCTCGACAGCCGACACCGGGTGATTGCGTTC
GAGGAAGTGTTTCGCGGAACCCTGGACGGAGCCAGCGTCTACCCACGGGAAATCGTGAAGATCGCCTTGGAACACAACGC
AGCCGCAATCATCCTGGTGCACAACCACCCCTCAGGTGATCCCGAGCCCAGCCAGGCGGATCGCAATCTCACCACGAAAC
TGCAGGACGCACTGAATCTGGTCGGAGTCAGAACGCTCGATCACGTCGTGGTAGGACAGGAGGATTGTGTGTCGTTGGCT
GAGCGCGGCTACCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50.82

73.939

0.376