Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RBH02_RS02535 Genome accession   NZ_CP132993
Coordinates   551709..552434 (-) Length   241 a.a.
NCBI ID   WP_014602412.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SRMPA3860     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546709..557434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH02_RS02510 (RBH02_02510) - 547181..547696 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  RBH02_RS02515 (RBH02_02515) rarD 548386..549282 (-) 897 WP_125075363.1 EamA family transporter RarD -
  RBH02_RS02520 (RBH02_02520) - 549485..550459 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  RBH02_RS02525 (RBH02_02525) - 550521..551279 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  RBH02_RS02530 (RBH02_02530) - 551347..551667 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  RBH02_RS02535 (RBH02_02535) comF 551709..552434 (-) 726 WP_014602412.1 ComF family protein Machinery gene
  RBH02_RS02540 (RBH02_02540) - 552573..552866 (-) 294 WP_003113255.1 hypothetical protein -
  RBH02_RS02545 (RBH02_02545) - 552920..553846 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  RBH02_RS02550 (RBH02_02550) - 553964..554722 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  RBH02_RS02555 (RBH02_02555) - 554799..555047 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RBH02_RS02560 (RBH02_02560) - 555058..556434 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RBH02_RS02565 (RBH02_02565) - 556436..557314 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27142.69 Da        Isoelectric Point: 11.0470

>NTDB_id=797698 RBH02_RS02535 WP_014602412.1 551709..552434(-) (comF) [Pseudomonas aeruginosa strain SRMPA3860]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAVWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=797698 RBH02_RS02535 WP_014602412.1 551709..552434(-) (comF) [Pseudomonas aeruginosa strain SRMPA3860]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGTCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTAGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

38.034

97.095

0.369