Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   PXV45_RS06720 Genome accession   NZ_CP119109
Coordinates   1302275..1302772 (+) Length   165 a.a.
NCBI ID   WP_001825340.1    Uniprot ID   A0A2S6DDC2
Organism   Staphylococcus aureus strain GENOMIC22-001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297275..1307772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV45_RS06680 (PXV45_06680) - 1297319..1298305 (+) 987 WP_000161315.1 ROK family glucokinase -
  PXV45_RS06685 (PXV45_06685) - 1298305..1298634 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PXV45_RS06690 (PXV45_06690) - 1298631..1299254 (+) 624 WP_021285938.1 MBL fold metallo-hydrolase -
  PXV45_RS06695 (PXV45_06695) comGA 1299306..1300280 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PXV45_RS06700 (PXV45_06700) comGB 1300252..1301322 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  PXV45_RS06705 (PXV45_06705) comGC 1301336..1301647 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PXV45_RS06710 (PXV45_06710) comGD 1301625..1302071 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  PXV45_RS06715 (PXV45_06715) comGE 1302058..1302357 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  PXV45_RS06720 (PXV45_06720) comGF 1302275..1302772 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  PXV45_RS06725 (PXV45_06725) - 1302869..1303015 (+) 147 WP_001789879.1 hypothetical protein -
  PXV45_RS06730 (PXV45_06730) - 1303005..1303529 (+) 525 WP_001015120.1 shikimate kinase -
  PXV45_RS06735 (PXV45_06735) gcvT 1303688..1304779 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  PXV45_RS06740 (PXV45_06740) gcvPA 1304799..1306145 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PXV45_RS06745 (PXV45_06745) gcvPB 1306138..1307610 (+) 1473 WP_000202179.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19179.92 Da        Isoelectric Point: 10.2192

>NTDB_id=797696 PXV45_RS06720 WP_001825340.1 1302275..1302772(+) (comGF) [Staphylococcus aureus strain GENOMIC22-001]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=797696 PXV45_RS06720 WP_001825340.1 1302275..1302772(+) (comGF) [Staphylococcus aureus strain GENOMIC22-001]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGCATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

96.97

100

0.97