Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RBH63_RS21610 Genome accession   NZ_CP132983
Coordinates   4025248..4025877 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ARS-C301     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4020248..4030877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH63_RS21595 helD 4020490..4022544 (-) 2055 WP_000420533.1 DNA helicase IV -
  RBH63_RS21600 yccF 4022667..4023113 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RBH63_RS21605 yccS 4023123..4025285 (+) 2163 WP_000875020.1 YccS family putative transporter -
  RBH63_RS21610 sxy/tfoX 4025248..4025877 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RBH63_RS21615 sulA 4026096..4026605 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RBH63_RS21620 ompA 4026962..4028002 (+) 1041 WP_000750416.1 porin OmpA -
  RBH63_RS21625 matP 4028078..4028530 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RBH63_RS21630 ycbZ 4028716..4030476 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=797675 RBH63_RS21610 WP_000839153.1 4025248..4025877(-) (sxy/tfoX) [Escherichia coli strain ARS-C301]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=797675 RBH63_RS21610 WP_000839153.1 4025248..4025877(-) (sxy/tfoX) [Escherichia coli strain ARS-C301]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1