Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RBH63_RS08715 Genome accession   NZ_CP132983
Coordinates   1451323..1451790 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain ARS-C301     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446323..1456790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH63_RS08690 rpsG 1446464..1446934 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RBH63_RS08695 fusA 1447031..1449145 (+) 2115 WP_000124700.1 elongation factor G -
  RBH63_RS08700 tuf 1449216..1450400 (+) 1185 WP_000031783.1 elongation factor Tu -
  RBH63_RS08705 bfd 1450583..1450777 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RBH63_RS08710 bfr 1450850..1451326 (+) 477 WP_000675515.1 bacterioferritin -
  RBH63_RS08715 pilD 1451323..1451790 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  RBH63_RS08720 rpsJ 1452169..1452480 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RBH63_RS08725 rplC 1452513..1453142 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RBH63_RS08730 rplD 1453153..1453758 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RBH63_RS08735 rplW 1453755..1454057 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RBH63_RS08740 rplB 1454075..1454896 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RBH63_RS08745 rpsS 1454913..1455191 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RBH63_RS08750 rplV 1455206..1455538 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RBH63_RS08755 rpsC 1455556..1456257 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RBH63_RS08760 rplP 1456270..1456680 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=797641 RBH63_RS08715 WP_000340171.1 1451323..1451790(-) (pilD) [Escherichia coli strain ARS-C301]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=797641 RBH63_RS08715 WP_000340171.1 1451323..1451790(-) (pilD) [Escherichia coli strain ARS-C301]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361