Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PX653_RS15920 Genome accession   NZ_CP119083
Coordinates   3621274..3622347 (+) Length   357 a.a.
NCBI ID   WP_277413746.1    Uniprot ID   -
Organism   Pseudoduganella chitinolytica strain ACM 3522     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3616274..3627347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX653_RS15905 (PX653_15905) - 3618189..3619163 (+) 975 WP_277413743.1 TauD/TfdA family dioxygenase -
  PX653_RS15910 (PX653_15910) - 3619199..3620116 (+) 918 WP_277413744.1 AEC family transporter -
  PX653_RS15915 (PX653_15915) - 3620213..3621226 (+) 1014 WP_277413745.1 MerR family transcriptional regulator -
  PX653_RS15920 (PX653_15920) pilA 3621274..3622347 (+) 1074 WP_277413746.1 signal recognition particle-docking protein FtsY Machinery gene
  PX653_RS15925 (PX653_15925) - 3622354..3623013 (+) 660 WP_277413747.1 cell division ATP-binding protein FtsE -
  PX653_RS15930 (PX653_15930) ftsX 3623010..3623924 (+) 915 WP_277413748.1 permease-like cell division protein FtsX -
  PX653_RS15935 (PX653_15935) rpoH 3624355..3625254 (+) 900 WP_181259321.1 RNA polymerase sigma factor RpoH -
  PX653_RS15940 (PX653_15940) - 3625741..3626205 (+) 465 WP_277413749.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37853.64 Da        Isoelectric Point: 6.3657

>NTDB_id=797589 PX653_RS15920 WP_277413746.1 3621274..3622347(+) (pilA) [Pseudoduganella chitinolytica strain ACM 3522]
MFSFFKKKPVTPEVPAPVSTPEPAAATPVSAPASAPASAPSPDSSLLDFEVETAARPEAKQSWMSRLKAGLSKTSANLSV
LFVGARIDDDLYDELEAALLMSDAGIDATQYLLDALKRKVKEDKLLDAAAVKGALKELLIDLLRPLEKSFELGRHQPTVM
MISGVNGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMVWGQRNNVTVVSQESGDPAAVSYDAVQSGKARGTN
VVMIDTAGRLPTQLHLMEELKKIKRVIGKGLEGAPHETLLVIDGNTGQNALAQVKAFDDALQLTGLIITKLDGTAKGGVI
AAIARVRPVPVYFIGIGEKIEDLQPFNAAEFVEALLG

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=797589 PX653_RS15920 WP_277413746.1 3621274..3622347(+) (pilA) [Pseudoduganella chitinolytica strain ACM 3522]
ATGTTCAGCTTCTTCAAGAAAAAACCTGTTACGCCCGAGGTGCCCGCGCCTGTCAGCACGCCCGAGCCGGCCGCCGCCAC
TCCCGTATCCGCTCCCGCCTCCGCTCCTGCTTCGGCGCCCTCCCCCGACAGCTCGCTGCTCGACTTCGAAGTCGAGACGG
CCGCCCGGCCCGAGGCGAAGCAGTCGTGGATGAGCCGCCTGAAGGCGGGCCTGTCGAAGACGTCCGCCAACCTGTCCGTG
CTGTTTGTCGGCGCCCGTATCGACGACGACCTGTACGACGAACTGGAAGCGGCGCTGCTGATGTCCGATGCCGGCATCGA
CGCCACCCAGTACCTGCTGGACGCGCTCAAGCGCAAGGTCAAGGAAGACAAGCTGCTGGATGCCGCCGCCGTCAAGGGTG
CCCTGAAGGAGCTGCTGATCGACCTGTTGCGCCCGCTTGAAAAATCGTTCGAGCTGGGCCGGCACCAGCCCACCGTGATG
ATGATTTCCGGCGTCAACGGCGCCGGCAAGACGACGACGATCGGCAAGCTTGCCAAACACATGCAGGCGCACGGGCAGTC
AGTGCTGCTGGCCGCAGGCGACACCTTCCGTGCCGCCGCGCGCGAGCAGTTGATGGTCTGGGGCCAGCGCAACAACGTGA
CCGTCGTGTCGCAGGAGTCCGGTGACCCGGCCGCCGTGTCGTATGACGCGGTCCAGTCCGGCAAGGCACGGGGCACCAAC
GTCGTCATGATCGACACGGCCGGCCGCCTGCCCACGCAACTGCACCTGATGGAAGAGCTGAAGAAGATCAAGCGCGTGAT
CGGCAAGGGCCTGGAAGGAGCACCGCACGAGACGCTGCTCGTCATCGACGGCAACACGGGCCAGAACGCGCTGGCGCAAG
TCAAAGCGTTCGACGACGCGCTGCAGCTGACCGGCCTAATCATCACGAAGCTGGACGGCACGGCCAAGGGCGGCGTCATT
GCCGCGATTGCCCGGGTCCGCCCCGTGCCCGTGTACTTCATCGGCATCGGCGAGAAGATCGAGGACCTGCAGCCGTTCAA
TGCGGCCGAGTTCGTCGAAGCCCTGCTCGGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(157-357)

SRP54-type protein, helical bundle domain (SRP54_N)

(84-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

60.065

86.275

0.518